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1MJH
Asym. Unit
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Asym.Unit (59 KB)
Biol.Unit 1 (55 KB)
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(1)
Title
:
STRUCTURE-BASED ASSIGNMENT OF THE BIOCHEMICAL FUNCTION OF HYPOTHETICAL PROTEIN MJ0577: A TEST CASE OF STRUCTURAL GENOMICS
Authors
:
T. I. Zarembinski, L. -W. Hung, H. J. Mueller-Dieckmann, K. -K. Kim, H. Yokota, R. Kim, S. -H. Kim, Berkeley Structural Genomics Center (Bsgc)
Date
:
04 Nov 98 (Deposition) - 23 Dec 98 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Hypothetical Protein, Structural Genomics, Functional Assignment, Atp Binding Protein, Bsgc Structure Funded By Nih, Protein Structure Initiative, Psi, Berkeley Structural Genomics Center
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. I. Zarembinski, L. -W. Hung, H. J. Mueller-Dieckmann, K. -K. Kim, H. Yokota, R. Kim, S. -H. Kim
Structure-Based Assignment Of The Biochemical Function Of A Hypothetical Protein: A Test Case Of Structural Genomics.
Proc. Natl. Acad. Sci. Usa V. 95 15189 1998
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
1b: ADENOSINE-5'-TRIPHOSPHATE (ATPb)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
View:
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No.
Name
Count
Type
Full Name
1
ATP
2
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
2
MN
2
Ligand/Ion
MANGANESE (II) ION
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Sites
(4, 4)
Info
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ATP A:2001 , HOH A:4009 , HOH A:4010 , HOH A:4019
BINDING SITE FOR RESIDUE MN A 4001
2
AC2
SOFTWARE
HOH B:8 , HOH B:15 , HOH B:28 , ATP B:3001
BINDING SITE FOR RESIDUE MN B 4002
3
AC3
SOFTWARE
PRO A:11 , THR A:12 , ASP A:13 , LEU A:39 , VAL A:41 , PRO A:108 , MET A:126 , GLY A:127 , HIS A:129 , GLY A:130 , LYS A:131 , THR A:132 , ASN A:133 , GLY A:140 , SER A:141 , VAL A:142 , THR A:143 , MN A:4001 , HOH A:4004 , HOH A:4012 , HOH A:4017 , HOH A:4025 , HOH A:4083
BINDING SITE FOR RESIDUE ATP A 2001
4
AC4
SOFTWARE
HOH B:6 , HOH B:11 , HOH B:15 , HOH B:24 , HOH B:62 , HOH B:115 , HOH B:133 , PRO B:1011 , THR B:1012 , ASP B:1013 , ALA B:1018 , VAL B:1041 , PRO B:1108 , MET B:1126 , GLY B:1127 , HIS B:1129 , GLY B:1130 , LYS B:1131 , THR B:1132 , ASN B:1133 , GLY B:1140 , SER B:1141 , VAL B:1142 , THR B:1143 , MN B:4002
BINDING SITE FOR RESIDUE ATP B 3001
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1mjha_ (A:)
1b: SCOP_d1mjhb_ (B:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Adenine nucleotide alpha hydrolase-like
(440)
Superfamily
:
Adenine nucleotide alpha hydrolases-like
(110)
Family
:
Universal stress protein-like
(10)
Protein domain
:
Hypothetical protein MJ0577
(1)
Methanococcus jannaschii [TaxId: 2190]
(1)
1a
d1mjha_
A:
1b
d1mjhb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1mjhB00 (B:1003-1162)
1b: CATH_1mjhA00 (A:3-162)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1
(328)
Methanocaldococcus jannaschii. Organism_taxid: 2190.
(8)
1a
1mjhB00
B:1003-1162
1b
1mjhA00
A:3-162
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Usp_1mjhB01 (B:1004-1158)
1b: PFAM_Usp_1mjhB02 (B:1004-1158)
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Clan
:
HUP
(230)
Family
:
Usp
(9)
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Meth
(1)
1a
Usp-1mjhB01
B:1004-1158
1b
Usp-1mjhB02
B:1004-1158
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Asymmetric Unit 1
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Asym.Unit (59 KB)
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