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1MJ3
Asym. Unit
Info
Asym.Unit (270 KB)
Biol.Unit 1 (262 KB)
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(1)
Title
:
CRYSTAL STRUCTURE ANALYSIS OF RAT ENOYL-COA HYDRATASE IN COMPLEX WITH HEXADIENOYL-COA
Authors
:
A. F. Bell, Y. Feng, H. A. Hofstein, S. Parikh, J. Wu, M. J. Rudolph, C. Kisker, P. J. Tonge
Date
:
26 Aug 02 (Deposition) - 24 Sep 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Homohexamer, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. F. Bell, Y. Feng, H. A. Hofstein, S. Parikh, J. Wu, M. J. Rudolph, C. Kisker, A. Whitty, P. J. Tonge
Stereoselectivity Of Enoyl-Coa Hydratase Results From Preferential Activation Of One Of Two Bound Substrate Conformers
Chem. Biol. V. 9 1247 2002
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 5)
Info
All Hetero Components
1a: HEXANOYL-COENZYME A (HXCa)
1b: HEXANOYL-COENZYME A (HXCb)
1c: HEXANOYL-COENZYME A (HXCc)
1d: HEXANOYL-COENZYME A (HXCd)
1e: HEXANOYL-COENZYME A (HXCe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
HXC
5
Ligand/Ion
HEXANOYL-COENZYME A
[
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:56 , ALA A:57 , LEU A:58 , ALA A:60 , ALA A:96 , GLY A:97 , ALA A:98 , ASP A:99 , ILE A:100 , LYS A:101 , LEU A:117 , LEU A:139 , GLY A:141 , PRO A:163 , GLU A:164 , LEU A:167 , GLY A:172 , HOH A:960 , HOH A:990 , HOH A:1020 , HOH A:1048 , HOH A:1060 , HOH A:1069 , PHE B:279 , LYS B:282 , LYS F:282
BINDING SITE FOR RESIDUE HXC A 951
2
AC2
SOFTWARE
LYS B:56 , ALA B:57 , ALA B:60 , ALA B:96 , GLY B:97 , ALA B:98 , ASP B:99 , ILE B:100 , LYS B:101 , LEU B:139 , GLY B:140 , GLY B:141 , PRO B:163 , LEU B:167 , GLY B:172 , HOH B:995 , HOH B:1078 , HOH B:1087 , HOH B:1089 , PHE C:279 , LYS C:282
BINDING SITE FOR RESIDUE HXC B 952
3
AC3
SOFTWARE
PHE A:279 , LYS A:282 , LYS C:43 , ASN C:44 , ALA C:57 , LEU C:58 , ALA C:60 , LYS C:92 , ALA C:96 , GLY C:97 , ALA C:98 , ASP C:99 , ILE C:100 , LYS C:101 , LEU C:139 , GLY C:140 , GLY C:141 , PRO C:163 , GLU C:164 , LEU C:167 , GLY C:172 , HOH C:986 , HOH C:994 , HOH C:1018 , HOH C:1041 , HOH C:1076
BINDING SITE FOR RESIDUE HXC C 953
4
AC4
SOFTWARE
HOH A:1048 , LYS B:282 , LYS E:56 , ALA E:57 , LEU E:58 , ALA E:60 , LYS E:92 , ALA E:96 , GLY E:97 , ALA E:98 , ASP E:99 , ILE E:100 , LYS E:101 , LEU E:117 , LEU E:139 , GLY E:141 , PRO E:163 , LEU E:167 , GLY E:172 , ARG E:197 , HOH E:987 , HOH E:992 , HOH E:1001 , HOH E:1015 , HOH E:1102 , PHE F:279 , LYS F:282 , HOH F:991
BINDING SITE FOR RESIDUE HXC E 954
5
AC5
SOFTWARE
PHE D:279 , LYS D:282 , LYS F:56 , ALA F:57 , ALA F:60 , ALA F:96 , GLY F:97 , ALA F:98 , ASP F:99 , ILE F:100 , LYS F:101 , MET F:103 , LEU F:117 , GLY F:140 , GLY F:141 , PRO F:163 , LEU F:167 , ARG F:197 , HOH F:1083 , HOH F:1095
BINDING SITE FOR RESIDUE HXC F 955
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: ENOYL_COA_HYDRATASE (A:131-151,B:131-151,C:131-151,D:13...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ENOYL_COA_HYDRATASE
PS00166
Enoyl-CoA hydratase/isomerase signature.
ECHM_RAT
131-151
6
A:131-151
B:131-151
C:131-151
D:131-151
E:131-151
F:131-151
[
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]
Exons
(7, 42)
Info
All Exons
Exon 1.2 (A:31-96 | B:31-96 | C:31-96 | D:31...)
Exon 1.3 (A:96-138 (gaps) | B:96-138 (gaps) ...)
Exon 1.4 (A:139-172 | B:139-172 | C:139-172 ...)
Exon 1.5 (A:172-207 | B:172-207 | C:172-207 ...)
Exon 1.6 (A:207-247 | B:207-247 | C:207-247 ...)
Exon 1.7 (A:247-269 | B:247-269 | C:247-269 ...)
Exon 1.8 (A:270-290 | B:270-290 | C:270-290 ...)
View:
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7
7: Boundary 1.7/1.8
8: Boundary 1.8/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000025446
1
ENSRNOE00000179019
chr1:
199910412-199910308
105
ECHM_RAT
1-30
30
0
-
-
1.2
ENSRNOT00000025446
2
ENSRNOE00000180786
chr1:
199908251-199908054
198
ECHM_RAT
30-96
67
6
A:31-96
B:31-96
C:31-96
D:31-96
E:31-96
F:31-96
66
66
66
66
66
66
1.3
ENSRNOT00000025446
3
ENSRNOE00000180948
chr1:
199907664-199907537
128
ECHM_RAT
96-138
43
6
A:96-138 (gaps)
B:96-138 (gaps)
C:96-138 (gaps)
D:96-138 (gaps)
E:96-138 (gaps)
F:96-138 (gaps)
43
43
43
43
43
43
1.4
ENSRNOT00000025446
4
ENSRNOE00000181097
chr1:
199906925-199906826
100
ECHM_RAT
139-172
34
6
A:139-172
B:139-172
C:139-172
D:139-172
E:139-172
F:139-172
34
34
34
34
34
34
1.5
ENSRNOT00000025446
5
ENSRNOE00000181259
chr1:
199905995-199905891
105
ECHM_RAT
172-207
36
6
A:172-207
B:172-207
C:172-207
D:172-207
E:172-207
F:172-207
36
36
36
36
36
36
1.6
ENSRNOT00000025446
6
ENSRNOE00000179510
chr1:
199905454-199905335
120
ECHM_RAT
207-247
41
6
A:207-247
B:207-247
C:207-247
D:207-247
E:207-247
F:207-247
41
41
41
41
41
41
1.7
ENSRNOT00000025446
7
ENSRNOE00000181392
chr1:
199903551-199903484
68
ECHM_RAT
247-269
23
6
A:247-269
B:247-269
C:247-269
D:247-269
E:247-269
F:247-269
23
23
23
23
23
23
1.8
ENSRNOT00000025446
8
ENSRNOE00000181536
chr1:
199902222-199901588
635
ECHM_RAT
270-290
21
6
A:270-290
B:270-290
C:270-290
D:270-290
E:270-290
F:270-290
21
21
21
21
21
21
[
close EXON info
]
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1mj3a_ (A:)
1b: SCOP_d1mj3b_ (B:)
1c: SCOP_d1mj3c_ (C:)
1d: SCOP_d1mj3d_ (D:)
1e: SCOP_d1mj3e_ (E:)
1f: SCOP_d1mj3f_ (F:)
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Superfamilies
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ClpP/crotonase
(207)
Superfamily
:
ClpP/crotonase
(207)
Family
:
Crotonase-like
(39)
Protein domain
:
Enoyl-CoA hydratase (crotonase)
(5)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(4)
1a
d1mj3a_
A:
1b
d1mj3b_
B:
1c
d1mj3c_
C:
1d
d1mj3d_
D:
1e
d1mj3e_
E:
1f
d1mj3f_
F:
[
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CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_1mj3A01 (A:31-232)
1b: CATH_1mj3B01 (B:31-232)
1c: CATH_1mj3C01 (C:31-232)
1d: CATH_1mj3D01 (D:31-232)
1e: CATH_1mj3E01 (E:31-232)
1f: CATH_1mj3F01 (F:31-232)
2a: CATH_1mj3A02 (A:233-289)
2b: CATH_1mj3B02 (B:233-289)
2c: CATH_1mj3C02 (C:233-289)
2d: CATH_1mj3D02 (D:233-289)
2e: CATH_1mj3E02 (E:233-289)
2f: CATH_1mj3F02 (F:233-289)
View:
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
2-enoyl-CoA Hydratase; Chain A, domain 1
(89)
Homologous Superfamily
:
2-enoyl-CoA Hydratase; Chain A, domain 1
(89)
Norway rat (Rattus norvegicus)
(6)
1a
1mj3A01
A:31-232
1b
1mj3B01
B:31-232
1c
1mj3C01
C:31-232
1d
1mj3D01
D:31-232
1e
1mj3E01
E:31-232
1f
1mj3F01
F:31-232
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Lyase 2-enoyl-coa Hydratase; Chain A, domain 2
(25)
Homologous Superfamily
:
Lyase 2-enoyl-coa Hydratase, Chain A, domain 2
(25)
Norway rat (Rattus norvegicus)
(5)
2a
1mj3A02
A:233-289
2b
1mj3B02
B:233-289
2c
1mj3C02
C:233-289
2d
1mj3D02
D:233-289
2e
1mj3E02
E:233-289
2f
1mj3F02
F:233-289
[
close CATH info
]
Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_ECH_1mj3F01 (F:40-282)
1b: PFAM_ECH_1mj3F02 (F:40-282)
1c: PFAM_ECH_1mj3F03 (F:40-282)
1d: PFAM_ECH_1mj3F04 (F:40-282)
1e: PFAM_ECH_1mj3F05 (F:40-282)
1f: PFAM_ECH_1mj3F06 (F:40-282)
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)
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)
(
)
Clan
:
ClpP_crotonase
(88)
Family
:
ECH
(52)
Rattus norvegicus (Rat)
(3)
1a
ECH-1mj3F01
F:40-282
1b
ECH-1mj3F02
F:40-282
1c
ECH-1mj3F03
F:40-282
1d
ECH-1mj3F04
F:40-282
1e
ECH-1mj3F05
F:40-282
1f
ECH-1mj3F06
F:40-282
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