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1MIY
Asym. Unit
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Asym.Unit (135 KB)
Biol.Unit 1 (128 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BACILLUS STEAROTHERMOPHILUS CCA-ADDING ENZYME IN COMPLEX WITH CTP
Authors
:
F. Li, Y. Xiong, J. Wang, H. D. Cho, A. M. Weiner, T. A. Steitz
Date
:
23 Aug 02 (Deposition) - 13 Dec 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.52
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Cca-Adding Enzyme, Trna Nucleotidyltransferase, Translation, Transferase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
F. Li, Y. Xiong, J. Wang, H. D. Cho, K. Tomita, A. M. Weiner, T. A. Steitz
Crystal Structures Of The Bacillus Stearothermophilus Cca-Adding Enzyme And Its Complexes With Atp Or Ctp
Cell(Cambridge, Mass. ) V. 111 815 2002
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: CYTIDINE-5'-TRIPHOSPHATE (CTPa)
1b: CYTIDINE-5'-TRIPHOSPHATE (CTPb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CTP
2
Ligand/Ion
CYTIDINE-5'-TRIPHOSPHATE
2
MG
4
Ligand/Ion
MAGNESIUM ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CTP A:5501
BINDING SITE FOR RESIDUE MG A 5601
2
AC2
SOFTWARE
ASP A:40 , ALA A:77 , HOH A:5612 , LYS B:58
BINDING SITE FOR RESIDUE MG A 5611
3
AC3
SOFTWARE
CTP B:6501
BINDING SITE FOR RESIDUE MG B 6601
4
AC4
SOFTWARE
ALA B:77 , HOH B:6612
BINDING SITE FOR RESIDUE MG B 6611
5
AC5
SOFTWARE
GLY A:26 , GLY A:27 , ARG A:30 , ARG A:110 , ARG A:111 , ASP A:112 , ASN A:116 , ASP A:154 , ARG A:157 , ARG A:160 , ARG A:163 , PHE A:164 , GLU A:167 , MG A:5601
BINDING SITE FOR RESIDUE CTP A 5501
6
AC6
SOFTWARE
GLY B:27 , ARG B:30 , ARG B:111 , ASP B:112 , ASN B:116 , ASP B:154 , ARG B:157 , ARG B:160 , ARG B:163 , PHE B:164 , GLU B:167 , MG B:6601
BINDING SITE FOR RESIDUE CTP B 6501
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1miya1 (A:140-404)
1b: SCOP_d1miyb1 (B:140-404)
2a: SCOP_d1miya2 (A:1-139)
2b: SCOP_d1miyb2 (B:1-139)
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Class
:
All alpha proteins
(14657)
Fold
:
Poly A polymerase C-terminal region-like
(5)
Superfamily
:
Poly A polymerase C-terminal region-like
(5)
Family
:
Poly A polymerase C-terminal region-like
(5)
Protein domain
:
tRNA CCA-adding enzyme, C-terminal domains
(4)
Bacillus stearothermophilus [TaxId: 1422]
(3)
1a
d1miya1
A:140-404
1b
d1miyb1
B:140-404
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Nucleotidyltransferase
(287)
Superfamily
:
Nucleotidyltransferase
(287)
Family
:
Poly A polymerase head domain-like
(5)
Protein domain
:
tRNA CCA-adding enzyme, head domain
(4)
Bacillus stearothermophilus [TaxId: 1422]
(3)
2a
d1miya2
A:1-139
2b
d1miyb2
B:1-139
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_tRNA_NucTran2_2_1miyB01 (B:245-393)
1b: PFAM_tRNA_NucTran2_2_1miyB02 (B:245-393)
2a: PFAM_PolyA_pol_1miyB03 (B:22-142)
2b: PFAM_PolyA_pol_1miyB04 (B:22-142)
3a: PFAM_PolyA_pol_RNAbd_1miyB05 (B:169-230)
3b: PFAM_PolyA_pol_RNAbd_1miyB06 (B:169-230)
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Organisms
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Clan
:
HD_PDEase
(93)
Family
:
tRNA_NucTran2_2
(2)
Geobacillus stearothermophilus (Bacillus stearothermophilus)
(2)
1a
tRNA_NucTran2_2-1miyB01
B:245-393
1b
tRNA_NucTran2_2-1miyB02
B:245-393
Clan
:
NTP_transf
(45)
Family
:
PolyA_pol
(4)
Geobacillus stearothermophilus (Bacillus stearothermophilus)
(2)
2a
PolyA_pol-1miyB03
B:22-142
2b
PolyA_pol-1miyB04
B:22-142
Clan
:
no clan defined [family: PolyA_pol_RNAbd]
(3)
Family
:
PolyA_pol_RNAbd
(3)
Geobacillus stearothermophilus (Bacillus stearothermophilus)
(2)
3a
PolyA_pol_RNAbd-1miyB05
B:169-230
3b
PolyA_pol_RNAbd-1miyB06
B:169-230
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Asymmetric Unit 1
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