PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1MI4
Asym. Unit
Info
Asym.Unit (81 KB)
Biol.Unit 1 (77 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
GLYPHOSATE INSENSITIVE G96A MUTANT EPSP SYNTHASE LIGANDED WITH SHIKIMATE-3-PHOSPHATE
Authors
:
S. Eschenburg, M. L. Healy, M. A. Priestman, G. H. Lushington, E. Schonbrunn
Date
:
21 Aug 02 (Deposition) - 18 Dec 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Inside-Out Alpha-Beta Barrel, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Eschenburg, M. L. Healy, M. A. Priestman, G. H. Lushington, E. Schonbrunn
How The Mutation Glycine96 To Alanine Confers Glyphosate Insensitivity To 5-Enolpyruvyl Shikimate-3-Phosphate Synthase From Escherichia Coli.
Planta V. 216 129 2002
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 15)
Info
All Hetero Components
1a: FORMIC ACID (FMTa)
1b: FORMIC ACID (FMTb)
1c: FORMIC ACID (FMTc)
1d: FORMIC ACID (FMTd)
1e: FORMIC ACID (FMTe)
1f: FORMIC ACID (FMTf)
1g: FORMIC ACID (FMTg)
1h: FORMIC ACID (FMTh)
1i: FORMIC ACID (FMTi)
1j: FORMIC ACID (FMTj)
1k: FORMIC ACID (FMTk)
1l: FORMIC ACID (FMTl)
1m: FORMIC ACID (FMTm)
1n: FORMIC ACID (FMTn)
2a: SHIKIMATE-3-PHOSPHATE (S3Pa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FMT
14
Ligand/Ion
FORMIC ACID
2
S3P
1
Ligand/Ion
SHIKIMATE-3-PHOSPHATE
[
close Hetero Component info
]
Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:22 , SER A:23 , ARG A:27 , THR A:97 , SER A:169 , SER A:170 , GLN A:171 , SER A:197 , TYR A:200 , ASP A:313 , ASN A:336 , LYS A:340 , FMT A:2001 , HOH A:2029 , HOH A:2030 , HOH A:2058 , HOH A:2071
BINDING SITE FOR RESIDUE S3P A 1001
02
AC2
SOFTWARE
LYS A:22 , ASP A:313 , GLU A:341 , ARG A:344 , HIS A:385 , ARG A:386 , S3P A:1001
BINDING SITE FOR RESIDUE FMT A 2001
03
AC3
SOFTWARE
LYS A:22 , ASN A:94 , ALA A:96 , THR A:97 , ARG A:124 , GLU A:341 , LYS A:411 , HOH A:2016
BINDING SITE FOR RESIDUE FMT A 2002
04
AC4
SOFTWARE
ALA A:380 , TYR A:382 , HOH A:2063 , HOH A:2329 , HOH A:2390
BINDING SITE FOR RESIDUE FMT A 2003
05
AC5
SOFTWARE
LYS A:373 , LEU A:374 , SER A:397 , ASP A:398 , HOH A:2145
BINDING SITE FOR RESIDUE FMT A 2004
06
AC6
SOFTWARE
THR A:65 , LEU A:66 , SER A:67 , ARG A:72 , HOH A:2325
BINDING SITE FOR RESIDUE FMT A 2005
07
AC7
SOFTWARE
TYR A:335 , HOH A:2255 , HOH A:2271
BINDING SITE FOR RESIDUE FMT A 2006
08
AC8
SOFTWARE
GLU A:89 , LEU A:90 , PHE A:91 , HOH A:2124
BINDING SITE FOR RESIDUE FMT A 2007
09
AC9
SOFTWARE
THR A:58 , VAL A:62 , SER A:63 , TYR A:64
BINDING SITE FOR RESIDUE FMT A 2008
10
BC1
SOFTWARE
GLU A:300 , LEU A:301 , PHE A:324 , HOH A:2316 , HOH A:2389
BINDING SITE FOR RESIDUE FMT A 2009
11
BC2
SOFTWARE
ASP A:13 , GLY A:14 , THR A:259
BINDING SITE FOR RESIDUE FMT A 2010
12
BC3
SOFTWARE
THR A:5 , LEU A:143 , ARG A:152 , PHE A:376 , THR A:402 , HOH A:2308
BINDING SITE FOR RESIDUE FMT A 2011
13
BC4
SOFTWARE
ALA A:303 , THR A:328 , HOH A:2253
BINDING SITE FOR RESIDUE FMT A 2012
14
BC5
SOFTWARE
GLN A:145 , TYR A:237 , LEU A:238 , HOH A:2365
BINDING SITE FOR RESIDUE FMT A 2013
15
BC6
SOFTWARE
PRO A:8 , ILE A:9 , ALA A:10 , GLN A:425 , ALA A:426 , HOH A:2121 , HOH A:2384 , HOH A:2433
BINDING SITE FOR RESIDUE FMT A 2014
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: EPSP_SYNTHASE_1 (A:90-104)
2: EPSP_SYNTHASE_2 (A:338-356)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EPSP_SYNTHASE_1
PS00104
EPSP synthase signature 1.
AROA_ECOLI
90-104
1
A:90-104
2
EPSP_SYNTHASE_2
PS00885
EPSP synthase signature 2.
AROA_ECOLI
338-356
1
A:338-356
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1mi4a_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
IF3-like
(127)
Superfamily
:
EPT/RTPC-like
(82)
Family
:
Enolpyruvate transferase, EPT
(68)
Protein domain
:
5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase
(26)
Escherichia coli [TaxId: 562]
(16)
1a
d1mi4a_
A:
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1mi4A01 (A:1-18,A:241-427)
1b: CATH_1mi4A02 (A:20-223)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-beta prism
(50)
Topology
:
UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain
(50)
Homologous Superfamily
:
[code=3.65.10.10, no name defined]
(47)
Escherichia coli. Organism_taxid: 562.
(8)
1a
1mi4A01
A:1-18,A:241-427
1b
1mi4A02
A:20-223
[
close CATH info
]
Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_EPSP_synthase_1mi4A01 (A:6-420)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
EPT_RTPC
(43)
Family
:
EPSP_synthase
(40)
Escherichia coli (strain K12)
(14)
1a
EPSP_synthase-1mi4A01
A:6-420
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (81 KB)
Header - Asym.Unit
Biol.Unit 1 (77 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1MI4
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help