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1MHN
Asym. Unit
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Asym.Unit (14 KB)
Biol.Unit 1 (12 KB)
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(1)
Title
:
HIGH RESOLUTION CRYSTAL STRUCTURE OF THE SMN TUDOR DOMAIN
Authors
:
R. Sprangers, M. R. Groves, I. Sinning, M. Sattler
Date
:
20 Aug 02 (Deposition) - 25 Mar 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Smn, Sma, Spinal Muscular Atrophy, Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Sprangers, M. R. Groves, I. Sinning, M. Sattler
High Resolution X-Ray And Nmr Structures Of The Smn Tudor Domain: Conformational Variation In The Binding Site For Symmetrically Dimethylated Arginine Residues
J. Mol. Biol. V. 327 507 2003
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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]
SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_034805 (G95R, chain A, )
2: VAR_034806 (A111G, chain A, )
3: VAR_034807 (I116F, chain A, )
4: VAR_034808 (Q136E, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_034805
G
95
R
SMN_HUMAN
Disease (SMA3)
---
A
G
95
R
2
UniProt
VAR_034806
A
111
G
SMN_HUMAN
Disease (SMA2)
---
A
A
111
G
3
UniProt
VAR_034807
I
116
F
SMN_HUMAN
Disease (SMA1)
---
A
I
116
F
4
UniProt
VAR_034808
Q
136
E
SMN_HUMAN
Disease (SMA1)
---
A
Q
136
E
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: TUDOR (A:91-147)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TUDOR
PS50304
Tudor domain profile.
SMN_HUMAN
91-151
1
A:91-147
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Exons
(2, 2)
Info
All Exons
Exon 1.3 (A:89-91)
Exon 1.4a (A:92-147)
View:
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All Exon Boundaries
1: Boundary 1.2b/1.3
2: Boundary 1.3/1.4a
3: Boundary 1.4a/1.5b
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000380743
1b
ENSE00001904512
chr5:
69345439-69345593
155
SMN_HUMAN
1-27
27
0
-
-
1.2b
ENST00000380743
2b
ENSE00001725187
chr5:
69359242-69359313
72
SMN_HUMAN
28-51
24
0
-
-
1.3
ENST00000380743
3
ENSE00001607984
chr5:
69361792-69361911
120
SMN_HUMAN
52-91
40
1
A:89-91
3
1.4a
ENST00000380743
4a
ENSE00001656721
chr5:
69362761-69362961
201
SMN_HUMAN
92-158
67
1
A:92-147
56
1.5b
ENST00000380743
5b
ENSE00001749658
chr5:
69363121-69363273
153
SMN_HUMAN
159-209
51
0
-
-
1.7b
ENST00000380743
7b
ENSE00001651294
chr5:
69365062-69365157
96
SMN_HUMAN
210-241
32
0
-
-
1.8a
ENST00000380743
8a
ENSE00001730323
chr5:
69366468-69366578
111
SMN_HUMAN
242-278
37
0
-
-
1.10a
ENST00000380743
10a
ENSE00001755872
chr5:
69372348-69372401
54
SMN_HUMAN
279-294
16
0
-
-
1.11c
ENST00000380743
11c
ENSE00001812360
chr5:
69372846-69373419
574
SMN_HUMAN
-
0
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1mhna_ (A:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
Tudor/PWWP/MBT
(72)
Family
:
Tudor domain
(24)
Protein domain
:
Survival motor neuron protein 1, smn
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1mhna_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1mhnA00 (A:89-147)
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Organisms
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Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
[code=2.30.30.140, no name defined]
(12)
Human (Homo sapiens)
(10)
1a
1mhnA00
A:89-147
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_SMN_1mhnA01 (A:89-147)
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Clans
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)
Clan
:
Tudor
(88)
Family
:
SMN
(1)
Homo sapiens (Human)
(1)
1a
SMN-1mhnA01
A:89-147
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Asymmetric Unit 1
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