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1MG5
Asym. Unit
Info
Asym.Unit (102 KB)
Biol.Unit 1 (97 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF DROSOPHILA MELANOGASTER ALCOHOL DEHYDROGENASE COMPLEXED WITH NADH AND ACETATE AT 1.6 A
Authors
:
J. Benach, S. Atrian, R. Gonzalez-Duarte, R. Ladenstein
Date
:
14 Aug 02 (Deposition) - 14 Oct 03 (Release) - 30 Oct 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.63
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Sdr, Adh, Drosophila Melanogaster, Nadh, Acetate, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Benach, J. O. Winberg, J. S. Svendsen, S. Atrian, R. Gonzalez-Duarte, R. Ladenstein
Drosophila Alcohol Dehydrogenase: Acetate-Enzyme Interactions And Novel Insights Into The Effects Of Electrostatics On Catalysis
J. Mol. Biol. V. 345 579 2005
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
2a: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIa)
2b: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
2
Ligand/Ion
ACETATE ION
2
NAI
2
Ligand/Ion
1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:139 , THR A:141 , TYR A:152 , ILE A:184 , NAI A:850
BINDING SITE FOR RESIDUE ACT A 900
2
AC2
SOFTWARE
SER B:139 , THR B:141 , TYR B:152 , ILE B:184 , NAI B:851
BINDING SITE FOR RESIDUE ACT B 901
3
AC3
SOFTWARE
ALA A:13 , GLY A:16 , GLY A:17 , ILE A:18 , ASP A:38 , ARG A:39 , ILE A:40 , TYR A:63 , ASP A:64 , VAL A:65 , GLY A:92 , ALA A:93 , GLY A:94 , ARG A:103 , ILE A:137 , GLY A:138 , SER A:139 , TYR A:152 , LYS A:156 , PRO A:182 , GLY A:183 , ILE A:184 , THR A:185 , THR A:187 , LEU A:189 , ACT A:900 , HOH A:903 , HOH A:930 , HOH A:959 , HOH A:989 , HOH A:1028 , HOH A:1033 , HOH A:1067
BINDING SITE FOR RESIDUE NAI A 850
4
AC4
SOFTWARE
ALA B:13 , GLY B:16 , GLY B:17 , ILE B:18 , ASP B:38 , ARG B:39 , ILE B:40 , TYR B:63 , ASP B:64 , VAL B:65 , GLY B:92 , ALA B:93 , GLY B:94 , ARG B:103 , VAL B:107 , ILE B:137 , GLY B:138 , SER B:139 , TYR B:152 , LYS B:156 , PRO B:182 , GLY B:183 , ILE B:184 , THR B:185 , THR B:187 , LEU B:189 , ACT B:901 , HOH B:906 , HOH B:912 , HOH B:964 , HOH B:970 , HOH B:1009 , HOH B:1010
BINDING SITE FOR RESIDUE NAI B 851
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SAPs(SNPs)/Variants
(7, 14)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_ADH_DROME_001 (N8V, chain A/B, )
2: VAR_ADH_DROME_002 (A45D, chain A/B, )
3: VAR_ADH_DROME_003 (A45V, chain A/B, )
4: VAR_ADH_DROME_004 (A51E, chain A/B, )
5: VAR_ADH_DROME_005 (A70S, chain A/B, )
6: VAR_ADH_DROME_006 (K192T, chain A/B, )
7: VAR_ADH_DROME_007 (P214S, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_ADH_DROME_001
*
N
9
V
ADH_DROME
---
---
A/B
N
8
V
2
UniProt
VAR_ADH_DROME_002
*
A
46
D
ADH_DROME
---
---
A/B
A
45
D
3
UniProt
VAR_ADH_DROME_003
*
A
46
V
ADH_DROME
---
---
A/B
A
45
V
4
UniProt
VAR_ADH_DROME_004
*
A
52
E
ADH_DROME
---
---
A/B
A
51
E
5
UniProt
VAR_ADH_DROME_005
*
A
71
S
ADH_DROME
---
---
A/B
A
70
S
6
UniProt
VAR_ADH_DROME_006
*
K
193
T
ADH_DROME
---
---
A/B
K
192
T
7
UniProt
VAR_ADH_DROME_007
*
P
215
S
ADH_DROME
---
---
A/B
P
214
S
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ADH_SHORT (A:139-167,B:139-167)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADH_SHORT
PS00061
Short-chain dehydrogenases/reductases family signature.
ADH_DROME
140-168
2
A:139-167
B:139-167
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1mg5a_ (A:)
1b: SCOP_d1mg5b_ (B:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
Drosophila alcohol dehydrogenase
(9)
Fruit fly (Drosophila melanogaster) [TaxId: 7227]
(1)
1a
d1mg5a_
A:
1b
d1mg5b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1mg5A00 (A:1-255)
1b: CATH_1mg5B00 (B:1-255)
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Organisms
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)
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)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Fruit fly (Drosophila melanogaster)
(1)
1a
1mg5A00
A:1-255
1b
1mg5B00
B:1-255
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_adh_short_1mg5B01 (B:7-170)
1b: PFAM_adh_short_1mg5B02 (B:7-170)
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)
Clan
:
NADP_Rossmann
(1239)
Family
:
adh_short
(92)
Drosophila melanogaster (Fruit fly)
(2)
1a
adh_short-1mg5B01
B:7-170
1b
adh_short-1mg5B02
B:7-170
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Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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Asym.Unit (102 KB)
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