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1MFW
Asym. Unit
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Asym.Unit (43 KB)
Biol.Unit 1 (38 KB)
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(1)
Title
:
STRUCTURE OF N-TERMINAL DOUBLECORTIN DOMAIN FROM DCLK: SELENOMETHIONINE LABELED PROTEIN
Authors
:
M. H. Kim, T. Cierpickil, U. Derewenda, D. Krowarsch, Y. Feng, Y. Devedjiev, Z. Dauter, C. A. Walsh, J. Otlewski, J. H. Bushweller, Z. Derewenda
Date
:
13 Aug 02 (Deposition) - 29 Apr 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Doublecortin, Doublecortin-Like Kinase, X-Ray Structure, Microtubule Bundling, Cortex Development, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. H. Kim, T. Cierpickil, U. Derewenda, D. Krowarsch, Y. Feng, Y. Devedjiev, Z. Dauter, C. A. Walsh, J. Otlewski, J. H. Bushweller, Z. Derewenda
The Dcx-Domain Tandems Of Doublecortin And Doublecortin-Like Kinase
Nat. Struct. Biol. V. 10 324 2003
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
1
Mod. Amino Acid
SELENOMETHIONINE
2
SO4
2
Ligand/Ion
SULFATE ION
[
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]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:101 , PRO A:102 , SER A:133 , ILE A:134 , GLU A:135 , HOH A:1008 , HOH A:1018 , HOH A:1036 , HOH A:1073 , HOH A:1092
BINDING SITE FOR RESIDUE SO4 A 1001
2
AC2
SOFTWARE
TYR A:109 , LYS A:116 , PRO A:136 , PHE A:137 , HOH A:1057 , HOH A:1101 , HOH A:1107 , HOH A:1120 , HOH A:1128
BINDING SITE FOR RESIDUE SO4 A 1002
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_045675 (R93Q, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_045675
R
93
Q
DCLK1_HUMAN
Unclassified
---
A
R
93
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: DC (A:57-143|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DC
PS50309
Doublecortin domain profile.
DCLK1_HUMAN
57-143
186-269
1
A:57-143
-
[
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Exons
(2, 2)
Info
All Exons
Exon 1.2 (A:49-126)
Exon 1.3 (A:126-154)
View:
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000360631
1
ENSE00001363906
chr13:
36705443-36705251
193
DCLK1_HUMAN
-
0
0
-
-
1.2
ENST00000360631
2
ENSE00001406064
chr13:
36700293-36699899
395
DCLK1_HUMAN
1-126
126
1
A:49-126
78
1.3
ENST00000360631
3
ENSE00000938675
chr13:
36686352-36686006
347
DCLK1_HUMAN
126-241
116
1
A:126-154
29
1.4
ENST00000360631
4
ENSE00001003745
chr13:
36521594-36521495
100
DCLK1_HUMAN
242-275
34
0
-
-
1.5
ENST00000360631
5
ENSE00001093760
chr13:
36445477-36445361
117
DCLK1_HUMAN
275-314
40
0
-
-
1.7
ENST00000360631
7
ENSE00000938821
chr13:
36428730-36428636
95
DCLK1_HUMAN
314-345
32
0
-
-
1.9
ENST00000360631
9
ENSE00000817083
chr13:
36413313-36413229
85
DCLK1_HUMAN
346-374
29
0
-
-
1.10
ENST00000360631
10
ENSE00000817080
chr13:
36410278-36410170
109
DCLK1_HUMAN
374-410
37
0
-
-
1.11
ENST00000360631
11
ENSE00000680576
chr13:
36402444-36402387
58
DCLK1_HUMAN
410-429
20
0
-
-
1.12
ENST00000360631
12
ENSE00000817078
chr13:
36401891-36401772
120
DCLK1_HUMAN
430-469
40
0
-
-
1.13
ENST00000360631
13
ENSE00000680573
chr13:
36397012-36396866
147
DCLK1_HUMAN
470-518
49
0
-
-
1.14
ENST00000360631
14
ENSE00000680572
chr13:
36385105-36384972
134
DCLK1_HUMAN
519-563
45
0
-
-
1.15
ENST00000360631
15
ENSE00001183960
chr13:
36383232-36383155
78
DCLK1_HUMAN
563-589
27
0
-
-
1.16b
ENST00000360631
16b
ENSE00000817073
chr13:
36382457-36382361
97
DCLK1_HUMAN
589-621
33
0
-
-
1.17a
ENST00000360631
17a
ENSE00000817072
chr13:
36379916-36379836
81
DCLK1_HUMAN
622-648
27
0
-
-
1.18
ENST00000360631
18
ENSE00000817070
chr13:
36367616-36367503
114
DCLK1_HUMAN
649-686
38
0
-
-
1.20a
ENST00000360631
20a
ENSE00001710872
chr13:
36348836-36345478
3359
DCLK1_HUMAN
687-740
54
0
-
-
[
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]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1mfwa_ (A:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Doublecortin (DC)
(5)
Family
:
Doublecortin (DC)
(5)
Protein domain
:
Doublecortin-like kinase Dclk
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1mfwa_
A:
[
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1mfwA00 (A:49-154)
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)
(
)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
[code=3.10.20.230, no name defined]
(5)
Human (Homo sapiens)
(5)
1a
1mfwA00
A:49-154
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_DCX_1mfwA01 (A:74-138)
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(
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)
(
)
Clan
:
no clan defined [family: DCX]
(3)
Family
:
DCX
(3)
Homo sapiens (Human)
(3)
1a
DCX-1mfwA01
A:74-138
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Chain A
Asymmetric Unit 1
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Asym.Unit (43 KB)
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