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1MFR
Asym. Unit
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Asym.Unit (694 KB)
Biol.Unit 1 (684 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF M FERRITIN
Authors
:
Y. Ha, D. Shi, N. M. Allewell
Date
:
18 Jun 98 (Deposition) - 22 Jun 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X (1x)
Keywords
:
Iron Storage, Diiron
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Ha, D. Shi, W. Small, E. C. Theil, N. M. Allewell
Crystal Structure Of Bullfrog M Ferritin At 2. 8 A Resolution: Analysis Of Subunit Interactions And The Binuclear Metal Center
J. Biol. Inorg. Chem. V. 4 243 1999
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 48)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1aa: MAGNESIUM ION (MGaa)
1ab: MAGNESIUM ION (MGab)
1ac: MAGNESIUM ION (MGac)
1ad: MAGNESIUM ION (MGad)
1ae: MAGNESIUM ION (MGae)
1af: MAGNESIUM ION (MGaf)
1ag: MAGNESIUM ION (MGag)
1ah: MAGNESIUM ION (MGah)
1ai: MAGNESIUM ION (MGai)
1aj: MAGNESIUM ION (MGaj)
1ak: MAGNESIUM ION (MGak)
1al: MAGNESIUM ION (MGal)
1am: MAGNESIUM ION (MGam)
1an: MAGNESIUM ION (MGan)
1ao: MAGNESIUM ION (MGao)
1ap: MAGNESIUM ION (MGap)
1aq: MAGNESIUM ION (MGaq)
1ar: MAGNESIUM ION (MGar)
1as: MAGNESIUM ION (MGas)
1at: MAGNESIUM ION (MGat)
1au: MAGNESIUM ION (MGau)
1av: MAGNESIUM ION (MGav)
1b: MAGNESIUM ION (MGb)
1c: MAGNESIUM ION (MGc)
1d: MAGNESIUM ION (MGd)
1e: MAGNESIUM ION (MGe)
1f: MAGNESIUM ION (MGf)
1g: MAGNESIUM ION (MGg)
1h: MAGNESIUM ION (MGh)
1i: MAGNESIUM ION (MGi)
1j: MAGNESIUM ION (MGj)
1k: MAGNESIUM ION (MGk)
1l: MAGNESIUM ION (MGl)
1m: MAGNESIUM ION (MGm)
1n: MAGNESIUM ION (MGn)
1o: MAGNESIUM ION (MGo)
1p: MAGNESIUM ION (MGp)
1q: MAGNESIUM ION (MGq)
1r: MAGNESIUM ION (MGr)
1s: MAGNESIUM ION (MGs)
1t: MAGNESIUM ION (MGt)
1u: MAGNESIUM ION (MGu)
1v: MAGNESIUM ION (MGv)
1w: MAGNESIUM ION (MGw)
1x: MAGNESIUM ION (MGx)
1y: MAGNESIUM ION (MGy)
1z: MAGNESIUM ION (MGz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MG
48
Ligand/Ion
MAGNESIUM ION
[
close Hetero Component info
]
Sites
(48, 48)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:23 , GLU A:58 , HIS A:61 , GLN A:137
BINDING SITE FOR RESIDUE MG A 176
02
AC2
SOFTWARE
GLU A:58 , GLU A:103 , GLN A:137 , ASP A:140
BINDING SITE FOR RESIDUE MG A 177
03
AC3
SOFTWARE
GLU B:23 , GLU B:58 , HIS B:61 , GLN B:137
BINDING SITE FOR RESIDUE MG B 176
04
AC4
SOFTWARE
GLU B:58 , GLU B:103 , GLN B:137 , ASP B:140
BINDING SITE FOR RESIDUE MG B 177
05
AC5
SOFTWARE
GLU C:23 , GLU C:58 , HIS C:61 , GLN C:137
BINDING SITE FOR RESIDUE MG C 176
06
AC6
SOFTWARE
GLU C:58 , GLU C:103 , GLN C:137 , ASP C:140
BINDING SITE FOR RESIDUE MG C 177
07
AC7
SOFTWARE
GLU D:23 , GLU D:58 , HIS D:61 , GLN D:137
BINDING SITE FOR RESIDUE MG D 176
08
AC8
SOFTWARE
GLU D:58 , GLU D:103 , GLN D:137 , ASP D:140
BINDING SITE FOR RESIDUE MG D 177
09
AC9
SOFTWARE
GLU E:23 , GLU E:58 , HIS E:61 , GLN E:137
BINDING SITE FOR RESIDUE MG E 176
10
BC1
SOFTWARE
GLU E:58 , GLU E:103 , GLN E:137 , ASP E:140
BINDING SITE FOR RESIDUE MG E 177
11
BC2
SOFTWARE
GLU F:23 , GLU F:58 , HIS F:61 , GLN F:137
BINDING SITE FOR RESIDUE MG F 176
12
BC3
SOFTWARE
GLU F:58 , GLU F:103 , GLN F:137 , ASP F:140
BINDING SITE FOR RESIDUE MG F 177
13
BC4
SOFTWARE
GLU G:23 , GLU G:58 , HIS G:61 , GLN G:137
BINDING SITE FOR RESIDUE MG G 176
14
BC5
SOFTWARE
GLU G:58 , GLU G:103 , GLN G:137 , ASP G:140
BINDING SITE FOR RESIDUE MG G 177
15
BC6
SOFTWARE
GLU H:23 , GLU H:58 , HIS H:61 , GLN H:137
BINDING SITE FOR RESIDUE MG H 176
16
BC7
SOFTWARE
GLU H:58 , GLU H:103 , GLN H:137 , ASP H:140
BINDING SITE FOR RESIDUE MG H 177
17
BC8
SOFTWARE
GLU I:23 , GLU I:58 , HIS I:61 , GLN I:137
BINDING SITE FOR RESIDUE MG I 176
18
BC9
SOFTWARE
GLU I:58 , GLU I:103 , GLN I:137 , ASP I:140
BINDING SITE FOR RESIDUE MG I 177
19
CC1
SOFTWARE
GLU J:23 , GLU J:58 , HIS J:61 , GLN J:137
BINDING SITE FOR RESIDUE MG J 176
20
CC2
SOFTWARE
GLU J:58 , GLU J:103 , GLN J:137 , ASP J:140
BINDING SITE FOR RESIDUE MG J 177
21
CC3
SOFTWARE
GLU K:23 , GLU K:58 , HIS K:61 , GLN K:137
BINDING SITE FOR RESIDUE MG K 176
22
CC4
SOFTWARE
GLU K:58 , GLU K:103 , GLN K:137 , ASP K:140
BINDING SITE FOR RESIDUE MG K 177
23
CC5
SOFTWARE
GLU L:23 , GLU L:58 , HIS L:61 , GLN L:137
BINDING SITE FOR RESIDUE MG L 176
24
CC6
SOFTWARE
GLU L:58 , GLU L:103 , GLN L:137 , ASP L:140
BINDING SITE FOR RESIDUE MG L 177
25
CC7
SOFTWARE
GLU M:23 , GLU M:58 , HIS M:61 , GLN M:137
BINDING SITE FOR RESIDUE MG M 176
26
CC8
SOFTWARE
GLU M:58 , GLU M:103 , GLN M:137 , ASP M:140
BINDING SITE FOR RESIDUE MG M 177
27
CC9
SOFTWARE
GLU N:23 , GLU N:58 , HIS N:61 , GLN N:137
BINDING SITE FOR RESIDUE MG N 176
28
DC1
SOFTWARE
GLU N:58 , GLU N:103 , GLN N:137 , ASP N:140
BINDING SITE FOR RESIDUE MG N 177
29
DC2
SOFTWARE
GLU O:23 , GLU O:58 , HIS O:61 , GLN O:137
BINDING SITE FOR RESIDUE MG O 176
30
DC3
SOFTWARE
GLU O:58 , GLU O:103 , GLN O:137 , ASP O:140
BINDING SITE FOR RESIDUE MG O 177
31
DC4
SOFTWARE
GLU P:23 , GLU P:58 , HIS P:61 , GLN P:137
BINDING SITE FOR RESIDUE MG P 176
32
DC5
SOFTWARE
GLU P:58 , GLU P:103 , GLN P:137 , ASP P:140
BINDING SITE FOR RESIDUE MG P 177
33
DC6
SOFTWARE
GLU Q:23 , GLU Q:58 , HIS Q:61 , GLN Q:137
BINDING SITE FOR RESIDUE MG Q 176
34
DC7
SOFTWARE
GLU Q:58 , GLU Q:103 , GLN Q:137 , ASP Q:140
BINDING SITE FOR RESIDUE MG Q 177
35
DC8
SOFTWARE
GLU R:23 , GLU R:58 , HIS R:61 , GLN R:137
BINDING SITE FOR RESIDUE MG R 176
36
DC9
SOFTWARE
GLU R:58 , GLU R:103 , GLN R:137 , ASP R:140
BINDING SITE FOR RESIDUE MG R 177
37
EC1
SOFTWARE
GLU S:23 , GLU S:58 , HIS S:61 , GLN S:137
BINDING SITE FOR RESIDUE MG S 176
38
EC2
SOFTWARE
GLU S:58 , GLU S:103 , GLN S:137 , ASP S:140
BINDING SITE FOR RESIDUE MG S 177
39
EC3
SOFTWARE
GLU T:23 , GLU T:58 , HIS T:61 , GLN T:137
BINDING SITE FOR RESIDUE MG T 176
40
EC4
SOFTWARE
GLU T:58 , GLU T:103 , GLN T:137 , ASP T:140
BINDING SITE FOR RESIDUE MG T 177
41
EC5
SOFTWARE
GLU U:23 , GLU U:58 , HIS U:61 , GLN U:137
BINDING SITE FOR RESIDUE MG U 176
42
EC6
SOFTWARE
GLU U:58 , GLU U:103 , GLN U:137 , ASP U:140
BINDING SITE FOR RESIDUE MG U 177
43
EC7
SOFTWARE
GLU V:23 , GLU V:58 , HIS V:61 , GLN V:137
BINDING SITE FOR RESIDUE MG V 176
44
EC8
SOFTWARE
GLU V:58 , GLU V:103 , GLN V:137 , ASP V:140
BINDING SITE FOR RESIDUE MG V 177
45
EC9
SOFTWARE
GLU W:23 , GLU W:58 , HIS W:61 , GLN W:137
BINDING SITE FOR RESIDUE MG W 176
46
FC1
SOFTWARE
GLU W:58 , GLU W:103 , GLN W:137 , ASP W:140
BINDING SITE FOR RESIDUE MG W 177
47
FC2
SOFTWARE
GLU X:23 , GLU X:58 , HIS X:61 , GLN X:137
BINDING SITE FOR RESIDUE MG X 176
48
FC3
SOFTWARE
GLU X:58 , GLU X:103 , GLN X:137 , ASP X:140
BINDING SITE FOR RESIDUE MG X 177
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 72)
Info
All PROSITE Patterns/Profiles
1: FERRITIN_LIKE (A:6-155,B:6-155,C:6-155,D:6-155,E:...)
2: FERRITIN_1 (A:57-75,B:57-75,C:57-75,D:57-75,E:...)
3: FERRITIN_2 (A:122-142,B:122-142,C:122-142,D:12...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FERRITIN_LIKE
PS50905
Ferritin-like diiron domain profile.
FRI2_LITCT
7-156
24
A:6-155
B:6-155
C:6-155
D:6-155
E:6-155
F:6-155
G:6-155
H:6-155
I:6-155
J:6-155
K:6-155
L:6-155
M:6-155
N:6-155
O:6-155
P:6-155
Q:6-155
R:6-155
S:6-155
T:6-155
U:6-155
V:6-155
W:6-155
X:6-155
2
FERRITIN_1
PS00540
Ferritin iron-binding regions signature 1.
FRI2_LITCT
58-76
24
A:57-75
B:57-75
C:57-75
D:57-75
E:57-75
F:57-75
G:57-75
H:57-75
I:57-75
J:57-75
K:57-75
L:57-75
M:57-75
N:57-75
O:57-75
P:57-75
Q:57-75
R:57-75
S:57-75
T:57-75
U:57-75
V:57-75
W:57-75
X:57-75
3
FERRITIN_2
PS00204
Ferritin iron-binding regions signature 2.
FRI2_LITCT
123-143
24
A:122-142
B:122-142
C:122-142
D:122-142
E:122-142
F:122-142
G:122-142
H:122-142
I:122-142
J:122-142
K:122-142
L:122-142
M:122-142
N:122-142
O:122-142
P:122-142
Q:122-142
R:122-142
S:122-142
T:122-142
U:122-142
V:122-142
W:122-142
X:122-142
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 24)
Info
All SCOP Domains
1a: SCOP_d1mfra_ (A:)
1b: SCOP_d1mfre_ (E:)
1c: SCOP_d1mfrf_ (F:)
1d: SCOP_d1mfrg_ (G:)
1e: SCOP_d1mfrh_ (H:)
1f: SCOP_d1mfri_ (I:)
1g: SCOP_d1mfrj_ (J:)
1h: SCOP_d1mfrk_ (K:)
1i: SCOP_d1mfrl_ (L:)
1j: SCOP_d1mfrm_ (M:)
1k: SCOP_d1mfrn_ (N:)
1l: SCOP_d1mfro_ (O:)
1m: SCOP_d1mfrp_ (P:)
1n: SCOP_d1mfrq_ (Q:)
1o: SCOP_d1mfrr_ (R:)
1p: SCOP_d1mfrs_ (S:)
1q: SCOP_d1mfrt_ (T:)
1r: SCOP_d1mfru_ (U:)
1s: SCOP_d1mfrv_ (V:)
1t: SCOP_d1mfrw_ (W:)
1u: SCOP_d1mfrx_ (X:)
1v: SCOP_d1mfrb_ (B:)
1w: SCOP_d1mfrc_ (C:)
1x: SCOP_d1mfrd_ (D:)
View:
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Classes
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)
(
)
Folds
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)
(
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Superfamilies
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
Ferritin
(232)
Protein domain
:
(Apo)ferritin
(68)
Bullfrog (Rana catesbeiana) [TaxId: 8400]
(8)
1a
d1mfra_
A:
1b
d1mfre_
E:
1c
d1mfrf_
F:
1d
d1mfrg_
G:
1e
d1mfrh_
H:
1f
d1mfri_
I:
1g
d1mfrj_
J:
1h
d1mfrk_
K:
1i
d1mfrl_
L:
1j
d1mfrm_
M:
1k
d1mfrn_
N:
1l
d1mfro_
O:
1m
d1mfrp_
P:
1n
d1mfrq_
Q:
1o
d1mfrr_
R:
1p
d1mfrs_
S:
1q
d1mfrt_
T:
1r
d1mfru_
U:
1s
d1mfrv_
V:
1t
d1mfrw_
W:
1u
d1mfrx_
X:
1v
d1mfrb_
B:
1w
d1mfrc_
C:
1x
d1mfrd_
D:
[
close SCOP info
]
CATH Domains
(1, 24)
Info
all CATH domains
1a: CATH_1mfrA00 (A:1-171)
1b: CATH_1mfrJ00 (J:1-171)
1c: CATH_1mfrK00 (K:1-171)
1d: CATH_1mfrL00 (L:1-171)
1e: CATH_1mfrM00 (M:1-171)
1f: CATH_1mfrN00 (N:1-171)
1g: CATH_1mfrO00 (O:1-171)
1h: CATH_1mfrP00 (P:1-171)
1i: CATH_1mfrQ00 (Q:1-171)
1j: CATH_1mfrR00 (R:1-171)
1k: CATH_1mfrS00 (S:1-171)
1l: CATH_1mfrB00 (B:1-171)
1m: CATH_1mfrT00 (T:1-171)
1n: CATH_1mfrU00 (U:1-171)
1o: CATH_1mfrV00 (V:1-171)
1p: CATH_1mfrW00 (W:1-171)
1q: CATH_1mfrX00 (X:1-171)
1r: CATH_1mfrC00 (C:1-171)
1s: CATH_1mfrD00 (D:1-171)
1t: CATH_1mfrE00 (E:1-171)
1u: CATH_1mfrF00 (F:1-171)
1v: CATH_1mfrG00 (G:1-171)
1w: CATH_1mfrH00 (H:1-171)
1x: CATH_1mfrI00 (I:1-171)
View:
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Architectures
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Topologies
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Homologous Superfamilies
(
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(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Ferritin;
(180)
Homologous Superfamily
:
[code=1.20.1260.10, no name defined]
(180)
Bullfrog (Rana catesbeiana)
(7)
1a
1mfrA00
A:1-171
1b
1mfrJ00
J:1-171
1c
1mfrK00
K:1-171
1d
1mfrL00
L:1-171
1e
1mfrM00
M:1-171
1f
1mfrN00
N:1-171
1g
1mfrO00
O:1-171
1h
1mfrP00
P:1-171
1i
1mfrQ00
Q:1-171
1j
1mfrR00
R:1-171
1k
1mfrS00
S:1-171
1l
1mfrB00
B:1-171
1m
1mfrT00
T:1-171
1n
1mfrU00
U:1-171
1o
1mfrV00
V:1-171
1p
1mfrW00
W:1-171
1q
1mfrX00
X:1-171
1r
1mfrC00
C:1-171
1s
1mfrD00
D:1-171
1t
1mfrE00
E:1-171
1u
1mfrF00
F:1-171
1v
1mfrG00
G:1-171
1w
1mfrH00
H:1-171
1x
1mfrI00
I:1-171
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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[
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Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
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Sidechain
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Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Chain M
Chain N
Chain O
Chain P
Chain Q
Chain R
Chain S
Chain T
Chain U
Chain V
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Chain X
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Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
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