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1MFI
Asym. Unit
Info
Asym.Unit (61 KB)
Biol.Unit 1 (57 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MACROPHAGE MIGRATION INHIBITORY FACTOR COMPLEXED WITH (E)-2-FLUORO-P-HYDROXYCINNAMATE
Authors
:
A. B. Taylor, W. H. Johnson Jr. , R. M. Czerwinski, C. P. Whitman, M. L. Hackert
Date
:
12 Aug 98 (Deposition) - 22 Jun 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Cytokine, Macrophage, Inflammatory Response, Tautomerase, Viral Protein
(Keyword Search:
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]
)
Reference
:
A. B. Taylor, W. H. Johnson Jr. , R. M. Czerwinski, H. S. Li, M. L. Hackert, C. P. Whitman
Crystal Structure Of Macrophage Migration Inhibitory Factor Complexed With (E)-2-Fluoro-P-Hydroxycinnamate At 1. 8 A Resolution: Implications For Enzymatic Catalysis And Inhibition.
Biochemistry V. 38 7444 1999
(for further references see the
PDB file header
)
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: 2-FLUORO-3-(4-HYDROXYPHENYL)-2E-PR... (FHCa)
1b: 2-FLUORO-3-(4-HYDROXYPHENYL)-2E-PR... (FHCb)
1c: 2-FLUORO-3-(4-HYDROXYPHENYL)-2E-PR... (FHCc)
View:
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Label:
No.
Name
Count
Type
Full Name
1
FHC
3
Ligand/Ion
2-FLUORO-3-(4-HYDROXYPHENYL)-2E-PROPENEOATE
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:1 , MET A:2 , LYS A:32 , TYR A:36 , HIS A:62 , ILE A:64 , MET A:101 , HOH A:231 , TYR C:95 , ASN C:97
BINDING SITE FOR RESIDUE FHC A 115
2
AC2
SOFTWARE
TYR A:95 , ASN A:97 , PRO B:1 , MET B:2 , LYS B:32 , TYR B:36 , HIS B:62 , ILE B:64 , MET B:101 , VAL B:106 , PHE B:113
BINDING SITE FOR RESIDUE FHC B 116
3
AC3
SOFTWARE
TYR B:95 , ASN B:97 , PRO C:1 , MET C:2 , LYS C:32 , TYR C:36 , HIS C:62 , SER C:63 , ILE C:64 , MET C:101 , VAL C:106
BINDING SITE FOR RESIDUE FHC C 117
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: MIF (A:54-68,B:54-68,C:54-68)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MIF
PS01158
Macrophage migration inhibitory factor family signature.
MIF_MOUSE
55-69
3
A:54-68
B:54-68
C:54-68
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Exons
(3, 9)
Info
All Exons
Exon 1.1 (A:1-35 | B:1-35 | C:1-35)
Exon 1.2 (A:36-93 | B:36-93 | C:36-93)
Exon 1.3 (A:93-114 | B:93-114 | C:93-114)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSMUST00000038169
1
ENSMUSE00000224889
chr10:
75322995-75322806
190
MIF_MOUSE
1-36
36
3
A:1-35
B:1-35
C:1-35
35
35
35
1.2
ENSMUST00000038169
2
ENSMUSE00000224877
chr10:
75322604-75322432
173
MIF_MOUSE
37-94
58
3
A:36-93
B:36-93
C:36-93
58
58
58
1.3
ENSMUST00000038169
3
ENSMUSE00000491081
chr10:
75322288-75322098
191
MIF_MOUSE
94-115
22
3
A:93-114
B:93-114
C:93-114
22
22
22
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SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1mfia_ (A:)
1b: SCOP_d1mfib_ (B:)
1c: SCOP_d1mfic_ (C:)
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Protein Domains
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(
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Tautomerase/MIF
(104)
Superfamily
:
Tautomerase/MIF
(104)
Family
:
MIF-related
(58)
Protein domain
:
Microphage migration inhibition factor (MIF)
(55)
Mouse (Mus musculus) [TaxId: 10090]
(3)
1a
d1mfia_
A:
1b
d1mfib_
B:
1c
d1mfic_
C:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1mfiA00 (A:1-114)
1b: CATH_1mfiB00 (B:1-114)
1c: CATH_1mfiC00 (C:1-114)
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)
(
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Macrophage Migration Inhibitory Factor
(40)
Homologous Superfamily
:
Macrophage Migration Inhibitory Factor
(40)
House mouse (Mus musculus)
(3)
1a
1mfiA00
A:1-114
1b
1mfiB00
B:1-114
1c
1mfiC00
C:1-114
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Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_MIF_1mfiC01 (C:1-114)
1b: PFAM_MIF_1mfiC02 (C:1-114)
1c: PFAM_MIF_1mfiC03 (C:1-114)
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Clan
:
MIF
(36)
Family
:
MIF
(22)
Mus musculus (Mouse)
(3)
1a
MIF-1mfiC01
C:1-114
1b
MIF-1mfiC02
C:1-114
1c
MIF-1mfiC03
C:1-114
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Asymmetric Unit 1
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