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1MFC
Asym. Unit
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Asym.Unit (76 KB)
Biol.Unit 1 (71 KB)
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(1)
Title
:
HIGH RESOLUTION STRUCTURES OF ANTIBODY FAB FRAGMENT COMPLEXED WITH CELL-SURFACE OLIGOSACCHARIDE OF PATHOGENIC SALMONELLA
Authors
:
A. Zdanov, M. Cygler
Date
:
25 Oct 93 (Deposition) - 31 Jan 94 (Release) - 25 Aug 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : H,L
Biol. Unit 1: H,L (1x)
Keywords
:
Immunoglobulin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Cygler, S. Wu, A. Zdanov, D. R. Bundle, D. R. Rose
Recognition Of A Carbohydrate Antigenic Determinant Of Salmonella By An Antibody.
Biochem. Soc. Trans. V. 21 437 1993
(for further references see the
PDB file header
)
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Hetero Components
(4, 4)
Info
All Hetero Components
1a: ABEQUOSE (ABEa)
2a: ALPHA D-GALACTOSE (GLAa)
3a: ALPHA-D-MANNOSE (MANa)
4a: ALPHA-L-RHAMNOSE (RAMa)
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No.
Name
Count
Type
Full Name
1
ABE
1
Ligand/Ion
ABEQUOSE
2
GLA
1
Ligand/Ion
ALPHA D-GALACTOSE
3
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
4
RAM
1
Ligand/Ion
ALPHA-L-RHAMNOSE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
MAN H:522 , RAM H:524 , HOH H:603 , HOH H:768 , TRP L:93
BINDING SITE FOR RESIDUE GLA H 521
2
AC2
SOFTWARE
HIS H:351 , GLA H:521 , ABE H:523 , RAM H:524 , HOH H:602
BINDING SITE FOR RESIDUE MAN H 522
3
AC3
SOFTWARE
TRP H:283 , HIS H:285 , GLY H:350 , HIS H:351 , GLY H:352 , MAN H:522 , HOH H:601 , HOH H:603 , TRP L:98
BINDING SITE FOR RESIDUE ABE H 523
4
AC4
SOFTWARE
TRP H:283 , ASN H:305 , ALA H:307 , GLA H:521 , MAN H:522
BINDING SITE FOR RESIDUE RAM H 524
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 4)
Info
All SCOP Domains
1a: SCOP_d1mfch2 (H:368-468)
2a: SCOP_d1mfcl2 (L:112-212)
3a: SCOP_d1mfch1 (H:251-367)
4a: SCOP_d1mfcl1 (L:1-111)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Mouse (Mus musculus) [TaxId: 10090]
(414)
1a
d1mfch2
H:368-468
Protein domain
:
Immunoglobulin light chain lambda constant domain, CL-lambda
(68)
Mouse (Mus musculus) [TaxId: 10090]
(21)
2a
d1mfcl2
L:112-212
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
(177)
3a
d1mfch1
H:251-367
Protein domain
:
Immunoglobulin light chain lambda variable domain, VL-lambda
(89)
Mouse (Mus musculus) [TaxId: 10090]
(35)
4a
d1mfcl1
L:1-111
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1mfcH02 (H:369-467)
1b: CATH_1mfcL01 (L:1-110)
1c: CATH_1mfcL02 (L:111-212)
1d: CATH_1mfcH01 (H:251-368)
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Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
1a
1mfcH02
H:369-467
1b
1mfcL01
L:1-110
1c
1mfcL02
L:111-212
1d
1mfcH01
H:251-368
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (76 KB)
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