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1MF8
Asym. Unit
Info
Asym.Unit (120 KB)
Biol.Unit 1 (113 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN CALCINEURIN COMPLEXED WITH CYCLOSPORIN A AND HUMAN CYCLOPHILIN
Authors
:
L. Jin, S. C. Harrison
Date
:
09 Aug 02 (Deposition) - 16 Oct 02 (Release) - 27 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Hydrolase-Isomerase-Immunosuppressant Complex, Calcineurin- Cyclophilin-Cyclosporin Complex, Cyclosporin A, Immunosuppressant, Hydrolase, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Jin, S. C. Harrison
Crystal Structure Of Human Calcineurin Complexed With Cyclosporin A And Human Cyclophilin
Proc. Natl. Acad. Sci. Usa V. 99 13522 2002
[
close entry info
]
Hetero Components
(8, 14)
Info
All Hetero Components
1a: ALPHA-AMINOBUTYRIC ACID (ABAa)
2a: 4-METHYL-4-[(E)-2-BUTENYL]-4,N-MET... (BMTa)
3a: CALCIUM ION (CAa)
3b: CALCIUM ION (CAb)
3c: CALCIUM ION (CAc)
3d: CALCIUM ION (CAd)
4a: D-ALANINE (DALa)
5a: N-METHYLLEUCINE (MLEa)
5b: N-METHYLLEUCINE (MLEb)
5c: N-METHYLLEUCINE (MLEc)
5d: N-METHYLLEUCINE (MLEd)
6a: N-METHYLVALINE (MVAa)
7a: PHOSPHATE ION (PO4a)
8a: SARCOSINE (SARa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ABA
1
Mod. Amino Acid
ALPHA-AMINOBUTYRIC ACID
2
BMT
1
Mod. Amino Acid
4-METHYL-4-[(E)-2-BUTENYL]-4,N-METHYL-THREONINE
3
CA
4
Ligand/Ion
CALCIUM ION
4
DAL
1
Mod. Amino Acid
D-ALANINE
5
MLE
4
Mod. Amino Acid
N-METHYLLEUCINE
6
MVA
1
Mod. Amino Acid
N-METHYLVALINE
7
PO4
1
Ligand/Ion
PHOSPHATE ION
8
SAR
1
Mod. Amino Acid
SARCOSINE
[
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]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP B:30 , ASP B:32 , SER B:34 , SER B:36 , GLU B:41
BINDING SITE FOR RESIDUE CA B 401
2
AC2
SOFTWARE
ASP B:62 , ASP B:64 , ASN B:66 , GLU B:68 , GLU B:73
BINDING SITE FOR RESIDUE CA B 402
3
AC3
SOFTWARE
ASP B:99 , ASP B:101 , ASP B:103 , TYR B:105 , GLU B:110
BINDING SITE FOR RESIDUE CA B 403
4
AC4
SOFTWARE
ASP B:140 , ASP B:142 , ASP B:144 , ARG B:146 , GLU B:151
BINDING SITE FOR RESIDUE CA B 404
5
AC5
SOFTWARE
ARG A:122 , TYR A:311
BINDING SITE FOR RESIDUE PO4 A 393
6
AC6
SOFTWARE
LEU A:312 , VAL A:314 , TYR A:341 , TRP A:342 , LEU A:343 , PRO A:344 , TRP A:352 , PHE A:356 , ASN B:122 , ARG C:55 , PHE C:60 , GLN C:63 , GLY C:72 , ALA C:101 , ASN C:102 , ALA C:103 , GLN C:111 , PHE C:113 , TRP C:121 , HIS C:126
BINDING SITE FOR CHAIN D OF CYCLOSPORIN A
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(5, 11)
Info
All PROSITE Patterns/Profiles
1: CSA_PPIASE_2 (C:7-163)
2: EF_HAND_1 (B:30-42|B:62-74|B:99-111|B:140-152)
3: CSA_PPIASE_1 (C:48-65)
4: EF_HAND_2 (B:49-84|B:17-45|B:86-121|B:127-162)
5: SER_THR_PHOSPHATASE (A:147-152)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CSA_PPIASE_2
PS50072
Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.
PPIA_HUMAN
7-163
1
C:7-163
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
CANB1_HUMAN
31-43
63-75
100-112
141-153
4
B:30-42
B:62-74
B:99-111
B:140-152
3
CSA_PPIASE_1
PS00170
Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.
PPIA_HUMAN
48-65
1
C:48-65
4
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
CANB1_HUMAN
50-85
18-46
87-122
128-163
4
B:49-84
B:17-45
B:86-121
B:127-162
5
SER_THR_PHOSPHATASE
PS00125
Serine/threonine specific protein phosphatases signature.
PP2BA_HUMAN
147-152
1
A:147-152
[
close PROSITE info
]
Exons
(15, 15)
Info
All Exons
Exon 1.6 (B:5-14)
Exon 1.7 (B:14-73)
Exon 1.8 (B:73-93)
Exon 1.9 (B:93-154)
Exon 1.10c (B:155-168)
Exon 2.2b (A:20-20)
Exon 2.3a (A:20-87)
Exon 2.6 (A:87-128)
Exon 2.8 (A:129-166)
Exon 2.9c (A:166-214)
Exon 2.10b (A:215-261)
Exon 2.11b (A:261-287)
Exon 2.12 (A:287-319)
Exon 2.13 (A:319-361)
Exon 2.14 (A:361-371)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.4/1.6
02: Boundary 1.6/1.7
03: Boundary 1.7/1.8
04: Boundary 1.8/1.9
05: Boundary 1.9/1.10c
06: Boundary 1.10c/-
07: Boundary -/2.2b
08: Boundary 2.2b/2.3a
09: Boundary 2.3a/2.6
10: Boundary 2.6/2.8
11: Boundary 2.8/2.9c
12: Boundary 2.9c/2.10b
13: Boundary 2.10b/2.11b
14: Boundary 2.11b/2.12
15: Boundary 2.12/2.13
16: Boundary 2.13/2.14
17: Boundary 2.14/2.15
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.4
ENST00000234310
4
ENSE00001191356
chr2:
68479663-68479257
407
CANB1_HUMAN
1-1
1
0
-
-
1.6
ENST00000234310
6
ENSE00001806348
chr2:
68444263-68444224
40
CANB1_HUMAN
2-15
14
1
B:5-14
10
1.7
ENST00000234310
7
ENSE00001434958
chr2:
68415822-68415646
177
CANB1_HUMAN
15-74
60
1
B:14-73
60
1.8
ENST00000234310
8
ENSE00000758788
chr2:
68414446-68414387
60
CANB1_HUMAN
74-94
21
1
B:73-93
21
1.9
ENST00000234310
9
ENSE00000810241
chr2:
68413784-68413600
185
CANB1_HUMAN
94-155
62
1
B:93-154
62
1.10c
ENST00000234310
10c
ENSE00001191364
chr2:
68408142-68405989
2154
CANB1_HUMAN
156-170
15
1
B:155-168
14
2.2b
ENST00000394854
2b
ENSE00001896251
chr4:
102268637-102267896
742
PP2BA_HUMAN
1-20
20
1
A:20-20
1
2.3a
ENST00000394854
3a
ENSE00000934976
chr4:
102117273-102117073
201
PP2BA_HUMAN
20-87
68
1
A:20-87
68
2.6
ENST00000394854
6
ENSE00000970132
chr4:
102030235-102030111
125
PP2BA_HUMAN
87-128
42
1
A:87-128
42
2.8
ENST00000394854
8
ENSE00001628359
chr4:
102020879-102020768
112
PP2BA_HUMAN
129-166
38
1
A:129-166
38
2.9c
ENST00000394854
9c
ENSE00000970134
chr4:
102019669-102019524
146
PP2BA_HUMAN
166-214
49
1
A:166-214
49
2.10b
ENST00000394854
10b
ENSE00001080696
chr4:
102015072-102014933
140
PP2BA_HUMAN
215-261
47
1
A:215-261
47
2.11b
ENST00000394854
11b
ENSE00001720711
chr4:
102004420-102004343
78
PP2BA_HUMAN
261-287
27
1
A:261-287
27
2.12
ENST00000394854
12
ENSE00000970136
chr4:
102001783-102001689
95
PP2BA_HUMAN
287-319
33
1
A:287-319
33
2.13
ENST00000394854
13
ENSE00001781830
chr4:
101984514-101984389
126
PP2BA_HUMAN
319-361
43
1
A:319-361
43
2.14
ENST00000394854
14
ENSE00001080697
chr4:
101982318-101982244
75
PP2BA_HUMAN
361-386
26
1
A:361-371
11
2.15
ENST00000394854
15
ENSE00001080695
chr4:
101961723-101961639
85
PP2BA_HUMAN
386-414
29
0
-
-
2.16
ENST00000394854
16
ENSE00000934972
chr4:
101953521-101953424
98
PP2BA_HUMAN
414-447
34
0
-
-
2.17
ENST00000394854
17
ENSE00001797567
chr4:
101950352-101950323
30
PP2BA_HUMAN
447-457
11
0
-
-
2.18e
ENST00000394854
18e
ENSE00001284009
chr4:
101947218-101944587
2632
PP2BA_HUMAN
457-521
65
0
-
-
[
close EXON info
]
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d1mf8b_ (B:)
2a: SCOP_d1mf8c_ (C:)
3a: SCOP_d1mf8a_ (A:)
View:
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Classes
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Folds
(
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(
)
Superfamilies
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)
(
)
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
Calmodulin-like
(356)
Protein domain
:
Calcineurin regulatory subunit (B-chain)
(6)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d1mf8b_
B:
Class
:
All beta proteins
(24004)
Fold
:
Cyclophilin-like
(169)
Superfamily
:
Cyclophilin-like
(169)
Family
:
Cyclophilin (peptidylprolyl isomerase)
(160)
Protein domain
:
Cyclophilin (eukaryotic)
(77)
Human (Homo sapiens), variant A [TaxId: 9606]
(58)
2a
d1mf8c_
C:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Metallo-dependent phosphatases
(115)
Superfamily
:
Metallo-dependent phosphatases
(115)
Family
:
Protein serine/threonine phosphatase
(50)
Protein domain
:
Protein phosphatase-2B (PP-2B, calcineurin A subunit)
(6)
Human (Homo sapiens) [TaxId: 9606]
(5)
3a
d1mf8a_
A:
[
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]
CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_1mf8A00 (A:20-371)
2a: CATH_1mf8B00 (B:5-168)
3a: CATH_1mf8C00 (C:1-164)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Purple Acid Phosphatase; chain A, domain 2
(87)
Homologous Superfamily
:
[code=3.60.21.10, no name defined]
(83)
Human (Homo sapiens)
(36)
1a
1mf8A00
A:20-371
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Recoverin; domain 1
(474)
Homologous Superfamily
:
EF-hand
(412)
Human (Homo sapiens)
(106)
2a
1mf8B00
B:5-168
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Cyclophilin
(95)
Homologous Superfamily
:
Cyclophilin
(95)
Human (Homo sapiens)
(58)
3a
1mf8C00
C:1-164
[
close CATH info
]
Pfam Domains
(5, 6)
Info
all PFAM domains
1a: PFAM_Metallophos_1mf8A01 (A:83-285)
2a: PFAM_Pro_isomerase_1mf8C01 (C:7-163)
3a: PFAM_EF_hand_3_1mf8B01 (B:22-46)
4a: PFAM_EF_hand_5_1mf8B02 (B:90-156)
4b: PFAM_EF_hand_5_1mf8B03 (B:90-156)
5a: PFAM_efhand_1mf8B04 (B:90-118)
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Clans
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Families
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)
Organisms
(
)
(
)
Clan
:
Calcineurin
(56)
Family
:
Metallophos
(45)
Homo sapiens (Human)
(15)
1a
Metallophos-1mf8A01
A:83-285
Clan
:
Cyclophil-like
(65)
Family
:
Pro_isomerase
(53)
Homo sapiens (Human)
(42)
2a
Pro_isomerase-1mf8C01
C:7-163
Clan
:
EF_hand
(270)
Family
:
EF_hand_3
(27)
Homo sapiens (Human)
(6)
3a
EF_hand_3-1mf8B01
B:22-46
Family
:
EF_hand_5
(126)
Homo sapiens (Human)
(31)
4a
EF_hand_5-1mf8B02
B:90-156
4b
EF_hand_5-1mf8B03
B:90-156
Family
:
efhand
(70)
Homo sapiens (Human)
(8)
5a
efhand-1mf8B04
B:90-118
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