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1MDZ
Asym. Unit
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Asym.Unit (67 KB)
Biol.Unit 1 (63 KB)
Biol.Unit 2 (122 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ARNB AMINOTRANSFERASE WITH CYCLOSERINE AND PYRIDOXAL 5' PHOSPHATE
Authors
:
B. W. Noland, J. M. Newman, J. Hendle, J. Badger, J. A. Christopher, J. Tr M. D. Buchanan, T. Wright, M. E. Rutter, W. E. Sanderson, H. -J. Muller- Dieckmann, K. S. Gajiwala, S. G. Buchanan
Date
:
07 Aug 02 (Deposition) - 11 Dec 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.07
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (2x)
Keywords
:
Type 1 Aminotransferase Fold, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. W. Noland, J. M. Newman, J. Hendle, J. Badger, J. A. Christopher, J. Tresser, M. D. Buchanan, T. Wright, M. E. Rutter, W. E. Sanderson, H. -J. Muller-Dieckmann, K. Gajiwala, S. G. Buchanan
Structural Studies Of Salmonella Typhimurium Arnb (Pmrh) Aminotransferase: A 4-Amino-4-Deoxy-L-Arabinose Lipopolysaccharide Modifying Enzyme
Structure V. 10 1569 2002
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: D-[3-HYDROXY-2-METHYL-5-PHOSPHONOO... (DCSa)
2a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
DCS
1
Ligand/Ion
D-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-N,O-CYCLOSERYLAMIDE
2
PLP
1
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
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Sites
(2, 2)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:62 , ALA A:63 , THR A:64 , TRP A:89 , SER A:91 , ASP A:160 , ALA A:162 , HIS A:163 , SER A:183 , HIS A:185 , ILE A:187 , LYS A:188 , LYS A:241 , HIS A:329 , PHE A:330 , PLP A:401 , HOH A:402 , HOH A:422 , HOH A:486
BINDING SITE FOR RESIDUE DCS A 400
2
AC2
SOFTWARE
SER A:62 , ALA A:63 , THR A:64 , THR A:88 , SER A:91 , ASP A:160 , HIS A:163 , SER A:183 , LYS A:188 , LYS A:241 , PHE A:330 , DCS A:400 , HOH A:402 , HOH A:422
BINDING SITE FOR RESIDUE PLP A 401
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
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1a: SCOP_d1mdza_ (A:)
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
GABA-aminotransferase-like
(167)
Protein domain
:
Aminotransferase ArnB
(3)
Salmonella typhimurium [TaxId: 90371]
(3)
1a
d1mdza_
A:
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1mdzA01 (A:19-258)
2a: CATH_1mdzA02 (A:259-383)
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Organisms
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(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aspartate Aminotransferase; domain 2
(384)
Homologous Superfamily
:
Type I PLP-dependent aspartate aminotransferase-like (Major domain)
(384)
Salmonella typhimurium. Organism_taxid: 602.
(4)
1a
1mdzA01
A:19-258
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Aspartate Aminotransferase, domain 1
(355)
Homologous Superfamily
:
Aspartate Aminotransferase, domain 1
(354)
Salmonella typhimurium. Organism_taxid: 602.
(4)
2a
1mdzA02
A:259-383
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_DegT_DnrJ_EryC1_1mdzA01 (A:10-374)
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Clan
:
PLP_aminotran
(240)
Family
:
DegT_DnrJ_EryC1
(4)
Salmonella typhimurium
(3)
1a
DegT_DnrJ_EryC1-1mdzA01
A:10-374
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Show PDB file:
Asym.Unit (67 KB)
Header - Asym.Unit
Biol.Unit 1 (63 KB)
Header - Biol.Unit 1
Biol.Unit 2 (122 KB)
Header - Biol.Unit 2
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