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Asym. Unit
Info
Asym.Unit (50 KB)
Biol.Unit 1 (23 KB)
Biol.Unit 2 (22 KB)
Biol.Unit 3 (161 KB)
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(1)
Title
:
KEY ROLE OF PHENYLALANINE 20 IN CYTOCHROME C3: STRUCTURE, STABILITY AND FUNCTION STUDIES
Authors
:
A. Dolla, P. Arnoux, I. Protasevich, V. Lobachov, M. Brugna, M. T. Guidi Orticoni, R. Haser, M. Czjzek, A. Makarov, M. Brushi
Date
:
08 Sep 98 (Deposition) - 04 May 99 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (4x)
Keywords
:
Mutant Cytochrome C3, Desulfovibrio Vulgaris Hildenborough, Electron Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Dolla, P. Arnoux, I. Protasevich, V. Lobachov, M. Brugna, M. T. Giudici-Orticoni, R. Haser, M. Czjzek, A. Makarov, M. Bruschi
Key Role Of Phenylalanine 20 In Cytochrome C3: Structure, Stability, And Function Studies.
Biochemistry V. 38 33 1999
(for further references see the
PDB file header
)
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Hetero Components
(1, 8)
Info
All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
1b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
1c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
1d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
1e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
1f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
1g: PROTOPORPHYRIN IX CONTAINING FE (HEMg)
1h: PROTOPORPHYRIN IX CONTAINING FE (HEMh)
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No.
Name
Count
Type
Full Name
1
HEM
8
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
MET A:11 , LEU A:20 , HIS A:22 , VAL A:28 , LYS A:29 , CYS A:30 , CYS A:33 , HIS A:34 , TYR A:43 , LYS A:45 , LEU B:9 , HEM B:110
BINDING SITE FOR RESIDUE HEM A 110
2
AC2
SOFTWARE
HIS A:35 , ASP A:42 , LYS A:45 , CYS A:46 , CYS A:51 , HIS A:52 , HIS A:67 , MET A:69 , THR A:74 , LYS A:75 , PHE A:76
BINDING SITE FOR RESIDUE HEM A 111
3
AC3
SOFTWARE
HIS A:25 , SER A:78 , CYS A:79 , CYS A:82 , HIS A:83 , LYS A:104 , HOH A:249
BINDING SITE FOR RESIDUE HEM A 112
4
AC4
SOFTWARE
GLN A:16 , PRO A:17 , VAL A:18 , TYR A:65 , HIS A:70 , CYS A:79 , HIS A:83 , CYS A:100 , CYS A:105 , HIS A:106 , HOH A:245 , PRO B:17 , CYS B:100 , HEM B:113
BINDING SITE FOR RESIDUE HEM A 113
5
AC5
SOFTWARE
HIS A:22 , HEM A:110 , LEU B:9 , MET B:11 , HIS B:22 , HIS B:25 , CYS B:30 , CYS B:33 , HIS B:34 , TYR B:43 , ARG B:44 , LYS B:45 , HOH B:339
BINDING SITE FOR RESIDUE HEM B 110
6
AC6
SOFTWARE
HIS B:35 , VAL B:37 , LYS B:45 , CYS B:46 , CYS B:51 , HIS B:52 , HIS B:67 , THR B:74 , LYS B:75 , PHE B:76 , LYS B:77
BINDING SITE FOR RESIDUE HEM B 111
7
AC7
SOFTWARE
HIS B:25 , LYS B:77 , CYS B:79 , CYS B:82 , HIS B:83 , VAL B:86 , LYS B:104
BINDING SITE FOR RESIDUE HEM B 112
8
AC8
SOFTWARE
GLN A:16 , PRO A:17 , HEM A:113 , MET B:11 , GLN B:16 , VAL B:18 , TYR B:65 , HIS B:70 , CYS B:79 , LEU B:97 , CYS B:100 , CYS B:105 , HIS B:106
BINDING SITE FOR RESIDUE HEM B 113
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: MULTIHEME_CYTC (A:25-88,B:25-88)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MULTIHEME_CYTC
PS51008
Multiheme cytochrome c family profile.
CYC3_DESVH
47-110
2
A:25-88
B:25-88
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Exons
(0, 0)
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All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1mdva_ (A:)
1b: SCOP_d1mdvb_ (B:)
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Protein Domains
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(
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Organisms
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)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Multiheme cytochromes
(149)
Superfamily
:
Multiheme cytochromes
(149)
Family
:
Cytochrome c3-like
(70)
Protein domain
:
Cytochrome c3
(36)
Desulfovibrio vulgaris [TaxId: 881]
(18)
1a
d1mdva_
A:
1b
d1mdvb_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1mdvA00 (A:7-107)
1b: CATH_1mdvB00 (B:8-107)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Cytochrome C3
(62)
Homologous Superfamily
:
Cytochrome C3
(62)
Vulgaris str (Desulfovibrio vulgaris subsp)
(3)
1a
1mdvA00
A:7-107
1b
1mdvB00
B:8-107
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Cytochrom_CIII_1mdvB01 (B:8-106)
1b: PFAM_Cytochrom_CIII_1mdvB02 (B:8-106)
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Clan
:
Multiheme_cytos
(34)
Family
:
Cytochrom_CIII
(23)
Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)
(1)
1a
Cytochrom_CIII-1mdvB01
B:8-106
1b
Cytochrom_CIII-1mdvB02
B:8-106
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Asym.Unit (50 KB)
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Header - Biol.Unit 1
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Biol.Unit 3 (161 KB)
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