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1MCZ
Asym. Unit
Info
Asym.Unit (1.3 MB)
Biol.Unit 1 (338 KB)
Biol.Unit 2 (339 KB)
Biol.Unit 3 (338 KB)
Biol.Unit 4 (339 KB)
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(1)
Title
:
BENZOYLFORMATE DECARBOXYLASE FROM PSEUDOMONAS PUTIDA COMPLEXED WITH AN INHIBITOR, R-MANDELATE
Authors
:
E. S. Polovnikova, A. K. Bera, M. S. Hasson
Date
:
06 Aug 02 (Deposition) - 25 Feb 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Biol. Unit 3: I,J,K,L (1x)
Biol. Unit 4: M,N,O,P (1x)
Keywords
:
Decarboxylase, Thiamin Diphosphate, R-Mandelate, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. S. Polovnikova, M. J. Mcleish, E. A. Sergienko, J. T. Burgner, N. L. Anderson, A. K. Bera, F. Jordan, G. L. Kenyon, M. S. Hasson
Structural And Kinetic Analysis Of Catalysis By A Thiamin Diphosphate-Dependent Enzyme, Benzoylformate Decarboxylase
Biochemistry V. 42 1820 2003
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 56)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
1c: MAGNESIUM ION (MGc)
1d: MAGNESIUM ION (MGd)
1e: MAGNESIUM ION (MGe)
1f: MAGNESIUM ION (MGf)
1g: MAGNESIUM ION (MGg)
1h: MAGNESIUM ION (MGh)
1i: MAGNESIUM ION (MGi)
1j: MAGNESIUM ION (MGj)
1k: MAGNESIUM ION (MGk)
1l: MAGNESIUM ION (MGl)
1m: MAGNESIUM ION (MGm)
1n: MAGNESIUM ION (MGn)
1o: MAGNESIUM ION (MGo)
1p: MAGNESIUM ION (MGp)
1q: MAGNESIUM ION (MGq)
1r: MAGNESIUM ION (MGr)
1s: MAGNESIUM ION (MGs)
1t: MAGNESIUM ION (MGt)
1u: MAGNESIUM ION (MGu)
1v: MAGNESIUM ION (MGv)
1w: MAGNESIUM ION (MGw)
1x: MAGNESIUM ION (MGx)
2a: (R)-MANDELIC ACID (RMNa)
2b: (R)-MANDELIC ACID (RMNb)
2c: (R)-MANDELIC ACID (RMNc)
2d: (R)-MANDELIC ACID (RMNd)
2e: (R)-MANDELIC ACID (RMNe)
2f: (R)-MANDELIC ACID (RMNf)
2g: (R)-MANDELIC ACID (RMNg)
2h: (R)-MANDELIC ACID (RMNh)
2i: (R)-MANDELIC ACID (RMNi)
2j: (R)-MANDELIC ACID (RMNj)
2k: (R)-MANDELIC ACID (RMNk)
2l: (R)-MANDELIC ACID (RMNl)
2m: (R)-MANDELIC ACID (RMNm)
2n: (R)-MANDELIC ACID (RMNn)
2o: (R)-MANDELIC ACID (RMNo)
2p: (R)-MANDELIC ACID (RMNp)
3a: THIAMIN DIPHOSPHATE (TDPa)
3b: THIAMIN DIPHOSPHATE (TDPb)
3c: THIAMIN DIPHOSPHATE (TDPc)
3d: THIAMIN DIPHOSPHATE (TDPd)
3e: THIAMIN DIPHOSPHATE (TDPe)
3f: THIAMIN DIPHOSPHATE (TDPf)
3g: THIAMIN DIPHOSPHATE (TDPg)
3h: THIAMIN DIPHOSPHATE (TDPh)
3i: THIAMIN DIPHOSPHATE (TDPi)
3j: THIAMIN DIPHOSPHATE (TDPj)
3k: THIAMIN DIPHOSPHATE (TDPk)
3l: THIAMIN DIPHOSPHATE (TDPl)
3m: THIAMIN DIPHOSPHATE (TDPm)
3n: THIAMIN DIPHOSPHATE (TDPn)
3o: THIAMIN DIPHOSPHATE (TDPo)
3p: THIAMIN DIPHOSPHATE (TDPp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MG
24
Ligand/Ion
MAGNESIUM ION
2
RMN
16
Ligand/Ion
(R)-MANDELIC ACID
3
TDP
16
Ligand/Ion
THIAMIN DIPHOSPHATE
[
close Hetero Component info
]
Sites
(56, 56)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:428 , ASN A:455 , THR A:457 , TDP A:533 , HOH A:547
BINDING SITE FOR RESIDUE MG A 529
02
AC2
SOFTWARE
ASN A:117 , LEU A:118 , ARG A:120 , ASN B:117 , LEU B:118 , ARG B:120
BINDING SITE FOR RESIDUE MG A 530
03
AC3
SOFTWARE
ASP B:428 , ASN B:455 , THR B:457 , TDP B:533 , HOH B:551
BINDING SITE FOR RESIDUE MG B 529
04
AC4
SOFTWARE
ASP C:428 , ASN C:455 , THR C:457 , TDP C:533 , HOH C:550
BINDING SITE FOR RESIDUE MG C 529
05
AC5
SOFTWARE
ASP D:428 , ASN D:455 , THR D:457 , TDP D:533 , HOH D:553
BINDING SITE FOR RESIDUE MG D 529
06
AC6
SOFTWARE
ASN C:117 , LEU C:118 , ARG C:120 , ASN D:117 , LEU D:118 , ARG D:120
BINDING SITE FOR RESIDUE MG D 530
07
AC7
SOFTWARE
ASP E:428 , ASN E:455 , THR E:457 , TDP E:533 , HOH E:546
BINDING SITE FOR RESIDUE MG E 529
08
AC8
SOFTWARE
ASN E:117 , LEU E:118 , ARG E:120 , ASN F:117 , LEU F:118 , ARG F:120
BINDING SITE FOR RESIDUE MG E 530
09
AC9
SOFTWARE
ASP F:428 , ASN F:455 , THR F:457 , TDP F:533 , HOH F:554
BINDING SITE FOR RESIDUE MG F 529
10
BC1
SOFTWARE
ASP G:428 , ASN G:455 , THR G:457 , TDP G:533 , HOH G:550
BINDING SITE FOR RESIDUE MG G 529
11
BC2
SOFTWARE
ASP H:428 , ASN H:455 , THR H:457 , TDP H:533 , HOH H:553
BINDING SITE FOR RESIDUE MG H 529
12
BC3
SOFTWARE
ASN G:117 , LEU G:118 , ARG G:120 , LEU H:118 , ARG H:120
BINDING SITE FOR RESIDUE MG H 530
13
BC4
SOFTWARE
ASP I:428 , ASN I:455 , THR I:457 , TDP I:533 , HOH I:841
BINDING SITE FOR RESIDUE MG I 529
14
BC5
SOFTWARE
ASN I:117 , LEU I:118 , ARG I:120 , ASN J:117 , LEU J:118 , ARG J:120
BINDING SITE FOR RESIDUE MG I 530
15
BC6
SOFTWARE
ASP J:428 , ASN J:455 , THR J:457 , TDP J:533 , HOH J:945
BINDING SITE FOR RESIDUE MG J 529
16
BC7
SOFTWARE
ASP K:428 , ASN K:455 , THR K:457 , TDP K:533 , HOH K:549
BINDING SITE FOR RESIDUE MG K 529
17
BC8
SOFTWARE
ASP L:428 , ASN L:455 , THR L:457 , TDP L:533 , HOH L:557
BINDING SITE FOR RESIDUE MG L 529
18
BC9
SOFTWARE
ASN K:117 , LEU K:118 , ARG K:120 , ASN L:117 , LEU L:118 , ARG L:120
BINDING SITE FOR RESIDUE MG L 530
19
CC1
SOFTWARE
ASP M:428 , ASN M:455 , THR M:457 , TDP M:533 , HOH M:1255
BINDING SITE FOR RESIDUE MG M 529
20
CC2
SOFTWARE
ASP N:428 , ASN N:455 , THR N:457 , TDP N:533 , HOH N:552
BINDING SITE FOR RESIDUE MG N 529
21
CC3
SOFTWARE
ASN M:117 , ASN N:117
BINDING SITE FOR RESIDUE MG N 530
22
CC4
SOFTWARE
ASP O:428 , ASN O:455 , THR O:457 , TDP O:533 , HOH O:1462
BINDING SITE FOR RESIDUE MG O 529
23
CC5
SOFTWARE
ASP P:428 , ASN P:455 , THR P:457 , TDP P:533 , HOH P:1566
BINDING SITE FOR RESIDUE MG P 529
24
CC6
SOFTWARE
LEU O:118 , MET P:79 , LEU P:118 , PRO P:119 , ARG P:120
BINDING SITE FOR RESIDUE MG P 530
25
CC7
SOFTWARE
GLU A:375 , SER A:376 , THR A:377 , SER A:378 , GLY A:401 , LEU A:403 , GLY A:427 , ASP A:428 , GLY A:429 , SER A:430 , TYR A:433 , ASN A:455 , THR A:457 , TYR A:458 , GLY A:459 , ALA A:460 , LEU A:461 , MG A:529 , RMN A:534 , ASN B:23 , PRO B:24 , GLY B:25 , GLU B:47 , HIS B:70 , ASN B:77
BINDING SITE FOR RESIDUE TDP A 533
26
CC8
SOFTWARE
HIS A:281 , THR A:377 , GLY A:401 , LEU A:461 , PHE A:464 , TDP A:533 , HOH A:601 , GLY B:25 , SER B:26 , HIS B:70 , LEU B:110
BINDING SITE FOR RESIDUE RMN A 534
27
CC9
SOFTWARE
ASN A:23 , PRO A:24 , GLY A:25 , GLU A:47 , HIS A:70 , ASN A:77 , GLU B:375 , SER B:376 , THR B:377 , SER B:378 , GLY B:401 , LEU B:403 , GLY B:427 , ASP B:428 , GLY B:429 , SER B:430 , TYR B:433 , ASN B:455 , THR B:457 , TYR B:458 , GLY B:459 , ALA B:460 , MG B:529 , RMN B:534
BINDING SITE FOR RESIDUE TDP B 533
28
DC1
SOFTWARE
SER A:26 , HIS A:70 , LEU A:110 , HIS B:281 , THR B:377 , GLY B:401 , LEU B:461 , TDP B:533 , HOH B:602
BINDING SITE FOR RESIDUE RMN B 534
29
DC2
SOFTWARE
GLU C:375 , SER C:376 , THR C:377 , SER C:378 , GLY C:401 , LEU C:403 , GLY C:427 , ASP C:428 , GLY C:429 , SER C:430 , TYR C:433 , ASN C:455 , THR C:457 , TYR C:458 , GLY C:459 , ALA C:460 , LEU C:461 , MG C:529 , RMN C:534 , ASN D:23 , PRO D:24 , GLY D:25 , GLU D:47 , HIS D:70 , ASN D:77
BINDING SITE FOR RESIDUE TDP C 533
30
DC3
SOFTWARE
HIS C:281 , THR C:377 , GLY C:401 , LEU C:461 , TDP C:533 , HOH C:603 , SER D:26 , HIS D:70 , LEU D:110
BINDING SITE FOR RESIDUE RMN C 534
31
DC4
SOFTWARE
ASN C:23 , PRO C:24 , GLY C:25 , GLU C:47 , HIS C:70 , ASN C:77 , GLU D:375 , SER D:376 , THR D:377 , SER D:378 , GLY D:401 , LEU D:403 , GLY D:427 , ASP D:428 , GLY D:429 , SER D:430 , TYR D:433 , ASN D:455 , THR D:457 , TYR D:458 , GLY D:459 , ALA D:460 , LEU D:461 , MG D:529 , RMN D:534 , HOH D:575
BINDING SITE FOR RESIDUE TDP D 533
32
DC5
SOFTWARE
SER C:26 , HIS C:70 , LEU C:110 , HIS D:281 , THR D:377 , GLY D:401 , LEU D:461 , PHE D:464 , TDP D:533
BINDING SITE FOR RESIDUE RMN D 534
33
DC6
SOFTWARE
GLU E:375 , SER E:376 , THR E:377 , SER E:378 , GLY E:401 , LEU E:403 , GLY E:427 , ASP E:428 , GLY E:429 , SER E:430 , TYR E:433 , ASN E:455 , THR E:457 , TYR E:458 , GLY E:459 , ALA E:460 , LEU E:461 , MG E:529 , RMN E:534 , ASN F:23 , PRO F:24 , GLY F:25 , GLU F:47 , HIS F:70 , ASN F:77
BINDING SITE FOR RESIDUE TDP E 533
34
DC7
SOFTWARE
HIS E:281 , THR E:377 , GLY E:401 , LEU E:461 , TDP E:533 , HOH E:599 , SER F:26 , HIS F:70 , LEU F:110
BINDING SITE FOR RESIDUE RMN E 534
35
DC8
SOFTWARE
ASN E:23 , PRO E:24 , GLY E:25 , GLU E:47 , HIS E:70 , ASN E:77 , GLU F:375 , SER F:376 , THR F:377 , SER F:378 , GLY F:401 , LEU F:403 , GLY F:427 , ASP F:428 , GLY F:429 , SER F:430 , TYR F:433 , ASN F:455 , THR F:457 , TYR F:458 , GLY F:459 , ALA F:460 , LEU F:461 , MG F:529 , RMN F:534
BINDING SITE FOR RESIDUE TDP F 533
36
DC9
SOFTWARE
SER E:26 , HIS E:70 , LEU E:110 , HIS F:281 , THR F:377 , GLY F:401 , LEU F:461 , PHE F:464 , TDP F:533
BINDING SITE FOR RESIDUE RMN F 534
37
EC1
SOFTWARE
GLU G:375 , SER G:376 , THR G:377 , SER G:378 , GLY G:401 , LEU G:403 , GLY G:427 , ASP G:428 , GLY G:429 , SER G:430 , TYR G:433 , ASN G:455 , THR G:457 , TYR G:458 , GLY G:459 , ALA G:460 , LEU G:461 , MG G:529 , RMN G:534 , ASN H:23 , PRO H:24 , GLY H:25 , GLU H:47 , HIS H:70 , ASN H:77
BINDING SITE FOR RESIDUE TDP G 533
38
EC2
SOFTWARE
HIS G:281 , THR G:377 , GLY G:401 , LEU G:461 , PHE G:464 , TDP G:533 , GLY H:25 , SER H:26 , HIS H:70 , LEU H:110
BINDING SITE FOR RESIDUE RMN G 534
39
EC3
SOFTWARE
ASN G:23 , PRO G:24 , GLY G:25 , GLU G:47 , HIS G:70 , ASN G:77 , GLU H:375 , SER H:376 , THR H:377 , SER H:378 , GLY H:401 , LEU H:403 , GLY H:427 , ASP H:428 , GLY H:429 , SER H:430 , TYR H:433 , ASN H:455 , THR H:457 , TYR H:458 , GLY H:459 , ALA H:460 , MG H:529 , RMN H:534 , HOH H:553
BINDING SITE FOR RESIDUE TDP H 533
40
EC4
SOFTWARE
SER G:26 , HIS G:70 , LEU G:110 , HIS H:281 , THR H:377 , GLY H:401 , LEU H:461 , TDP H:533
BINDING SITE FOR RESIDUE RMN H 534
41
EC5
SOFTWARE
GLU I:375 , SER I:376 , THR I:377 , SER I:378 , GLY I:401 , LEU I:403 , GLY I:427 , ASP I:428 , GLY I:429 , SER I:430 , TYR I:433 , ASN I:455 , THR I:457 , TYR I:458 , GLY I:459 , ALA I:460 , MG I:529 , RMN I:534 , HOH I:865 , ASN J:23 , PRO J:24 , GLY J:25 , GLU J:47 , HIS J:70 , ASN J:77
BINDING SITE FOR RESIDUE TDP I 533
42
EC6
SOFTWARE
HIS I:281 , THR I:377 , GLY I:401 , LEU I:461 , TDP I:533 , HOH I:899 , SER J:26 , HIS J:70 , LEU J:110
BINDING SITE FOR RESIDUE RMN I 534
43
EC7
SOFTWARE
ASN I:23 , PRO I:24 , GLY I:25 , GLU I:47 , HIS I:70 , ASN I:77 , GLU J:375 , SER J:376 , THR J:377 , SER J:378 , GLY J:401 , LEU J:403 , GLY J:427 , ASP J:428 , GLY J:429 , SER J:430 , TYR J:433 , ASN J:455 , THR J:457 , TYR J:458 , GLY J:459 , ALA J:460 , LEU J:461 , MG J:529 , RMN J:534
BINDING SITE FOR RESIDUE TDP J 533
44
EC8
SOFTWARE
SER I:26 , HIS I:70 , LEU I:110 , HIS J:281 , THR J:377 , GLY J:401 , LEU J:461 , PHE J:464 , TDP J:533 , HOH J:1002
BINDING SITE FOR RESIDUE RMN J 534
45
EC9
SOFTWARE
GLU K:375 , SER K:376 , THR K:377 , SER K:378 , GLY K:401 , LEU K:403 , GLY K:427 , ASP K:428 , GLY K:429 , SER K:430 , TYR K:433 , ASN K:455 , THR K:457 , TYR K:458 , GLY K:459 , ALA K:460 , LEU K:461 , MG K:529 , RMN K:534 , HOH K:549 , HOH K:572 , ASN L:23 , PRO L:24 , GLY L:25 , GLU L:47 , HIS L:70 , ASN L:77
BINDING SITE FOR RESIDUE TDP K 533
46
FC1
SOFTWARE
HIS K:281 , THR K:377 , GLY K:401 , LEU K:461 , PHE K:464 , TDP K:533 , SER L:26 , HIS L:70 , LEU L:110
BINDING SITE FOR RESIDUE RMN K 534
47
FC2
SOFTWARE
ASN K:23 , PRO K:24 , GLY K:25 , GLU K:47 , HIS K:70 , ASN K:77 , GLU L:375 , SER L:376 , THR L:377 , SER L:378 , GLY L:401 , LEU L:403 , GLY L:427 , ASP L:428 , GLY L:429 , SER L:430 , TYR L:433 , ASN L:455 , THR L:457 , TYR L:458 , GLY L:459 , ALA L:460 , MG L:529 , RMN L:534
BINDING SITE FOR RESIDUE TDP L 533
48
FC3
SOFTWARE
SER K:26 , HIS K:70 , LEU K:110 , HIS L:281 , THR L:377 , GLY L:401 , LEU L:461 , TDP L:533 , HOH L:610
BINDING SITE FOR RESIDUE RMN L 534
49
FC4
SOFTWARE
GLU M:375 , SER M:376 , THR M:377 , SER M:378 , GLY M:401 , LEU M:403 , GLY M:427 , ASP M:428 , GLY M:429 , SER M:430 , TYR M:433 , ASN M:455 , THR M:457 , TYR M:458 , GLY M:459 , ALA M:460 , MG M:529 , RMN M:534 , HOH M:1279 , ASN N:23 , PRO N:24 , GLY N:25 , GLU N:47 , HIS N:70 , ASN N:77
BINDING SITE FOR RESIDUE TDP M 533
50
FC5
SOFTWARE
HIS M:281 , THR M:377 , GLY M:401 , LEU M:461 , TDP M:533 , SER N:26 , HIS N:70 , LEU N:110
BINDING SITE FOR RESIDUE RMN M 534
51
FC6
SOFTWARE
ASN M:23 , PRO M:24 , GLY M:25 , GLU M:47 , HIS M:70 , ASN M:77 , GLU N:375 , SER N:376 , THR N:377 , SER N:378 , GLY N:401 , LEU N:403 , GLY N:427 , ASP N:428 , GLY N:429 , SER N:430 , TYR N:433 , ASN N:455 , THR N:457 , TYR N:458 , GLY N:459 , ALA N:460 , MG N:529 , RMN N:534 , HOH N:574
BINDING SITE FOR RESIDUE TDP N 533
52
FC7
SOFTWARE
SER M:26 , HIS M:70 , LEU M:110 , HIS N:281 , THR N:377 , GLY N:401 , LEU N:461 , PHE N:464 , TDP N:533
BINDING SITE FOR RESIDUE RMN N 534
53
FC8
SOFTWARE
GLU O:375 , SER O:376 , THR O:377 , SER O:378 , GLY O:401 , LEU O:403 , GLY O:427 , ASP O:428 , GLY O:429 , SER O:430 , TYR O:433 , ASN O:455 , THR O:457 , TYR O:458 , GLY O:459 , ALA O:460 , LEU O:461 , MG O:529 , RMN O:534 , HOH O:1486 , ASN P:23 , PRO P:24 , GLY P:25 , GLU P:47 , HIS P:70 , ASN P:77
BINDING SITE FOR RESIDUE TDP O 533
54
FC9
SOFTWARE
HIS O:281 , THR O:377 , GLY O:401 , LEU O:461 , TDP O:533 , SER P:26 , HIS P:70 , LEU P:110
BINDING SITE FOR RESIDUE RMN O 534
55
GC1
SOFTWARE
ASN O:23 , PRO O:24 , GLY O:25 , GLU O:47 , HIS O:70 , ASN O:77 , GLU P:375 , SER P:376 , THR P:377 , SER P:378 , GLY P:401 , LEU P:403 , GLY P:427 , ASP P:428 , GLY P:429 , SER P:430 , TYR P:433 , ASN P:455 , THR P:457 , TYR P:458 , GLY P:459 , ALA P:460 , LEU P:461 , MG P:529 , RMN P:534 , HOH P:1590
BINDING SITE FOR RESIDUE TDP P 533
56
GC2
SOFTWARE
SER O:26 , HIS O:70 , LEU O:110 , HIS P:281 , THR P:377 , GLY P:401 , LEU P:461 , TDP P:533
BINDING SITE FOR RESIDUE RMN P 534
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 16)
Info
All PROSITE Patterns/Profiles
1: TPP_ENZYMES (A:411-430,B:411-430,C:411-430,D:41...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TPP_ENZYMES
PS00187
Thiamine pyrophosphate enzymes signature.
MDLC_PSEPU
411-430
16
A:411-430
B:411-430
C:411-430
D:411-430
E:411-430
F:411-430
G:411-430
H:411-430
I:411-430
J:411-430
K:411-430
L:411-430
M:411-430
N:411-430
O:411-430
P:411-430
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 48)
Info
All SCOP Domains
1a: SCOP_d1mcza1 (A:182-341)
1b: SCOP_d1mczb1 (B:182-341)
1c: SCOP_d1mczc1 (C:182-341)
1d: SCOP_d1mczd1 (D:182-341)
1e: SCOP_d1mcze1 (E:182-341)
1f: SCOP_d1mczf1 (F:182-341)
1g: SCOP_d1mczg1 (G:182-341)
1h: SCOP_d1mczh1 (H:182-341)
1i: SCOP_d1mczi1 (I:182-341)
1j: SCOP_d1mczj1 (J:182-341)
1k: SCOP_d1mczk1 (K:182-341)
1l: SCOP_d1mczl1 (L:182-341)
1m: SCOP_d1mczm1 (M:182-341)
1n: SCOP_d1mczn1 (N:182-341)
1o: SCOP_d1mczo1 (O:182-341)
1p: SCOP_d1mczp1 (P:182-341)
2a: SCOP_d1mcza3 (A:342-525)
2b: SCOP_d1mcze3 (E:342-525)
2c: SCOP_d1mczf3 (F:342-525)
2d: SCOP_d1mczg3 (G:342-525)
2e: SCOP_d1mczh3 (H:342-525)
2f: SCOP_d1mczi3 (I:342-525)
2g: SCOP_d1mczj3 (J:342-525)
2h: SCOP_d1mczk3 (K:342-525)
2i: SCOP_d1mczl3 (L:342-525)
2j: SCOP_d1mczm3 (M:342-525)
2k: SCOP_d1mczn3 (N:342-525)
2l: SCOP_d1mczo3 (O:342-525)
2m: SCOP_d1mczp3 (P:342-525)
2n: SCOP_d1mczb3 (B:342-525)
2o: SCOP_d1mczc3 (C:342-525)
2p: SCOP_d1mczd3 (D:342-525)
3a: SCOP_d1mcza2 (A:2-181)
3b: SCOP_d1mcze2 (E:2-181)
3c: SCOP_d1mczf2 (F:2-181)
3d: SCOP_d1mczg2 (G:2-181)
3e: SCOP_d1mczh2 (H:2-181)
3f: SCOP_d1mczi2 (I:2-181)
3g: SCOP_d1mczj2 (J:2-181)
3h: SCOP_d1mczk2 (K:2-181)
3i: SCOP_d1mczl2 (L:2-181)
3j: SCOP_d1mczm2 (M:2-181)
3k: SCOP_d1mczn2 (N:2-181)
3l: SCOP_d1mczo2 (O:2-181)
3m: SCOP_d1mczp2 (P:2-181)
3n: SCOP_d1mczb2 (B:2-181)
3o: SCOP_d1mczc2 (C:2-181)
3p: SCOP_d1mczd2 (D:2-181)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
DHS-like NAD/FAD-binding domain
(176)
Superfamily
:
DHS-like NAD/FAD-binding domain
(176)
Family
:
Pyruvate oxidase and decarboxylase, middle domain
(74)
Protein domain
:
Benzoylformate decarboxylase
(32)
Pseudomonas putida [TaxId: 303]
(32)
1a
d1mcza1
A:182-341
1b
d1mczb1
B:182-341
1c
d1mczc1
C:182-341
1d
d1mczd1
D:182-341
1e
d1mcze1
E:182-341
1f
d1mczf1
F:182-341
1g
d1mczg1
G:182-341
1h
d1mczh1
H:182-341
1i
d1mczi1
I:182-341
1j
d1mczj1
J:182-341
1k
d1mczk1
K:182-341
1l
d1mczl1
L:182-341
1m
d1mczm1
M:182-341
1n
d1mczn1
N:182-341
1o
d1mczo1
O:182-341
1p
d1mczp1
P:182-341
Fold
:
Thiamin diphosphate-binding fold (THDP-binding)
(289)
Superfamily
:
Thiamin diphosphate-binding fold (THDP-binding)
(289)
Family
:
Pyruvate oxidase and decarboxylase PP module
(43)
Protein domain
:
Benzoylformate decarboxylase
(7)
Pseudomonas putida [TaxId: 303]
(7)
2a
d1mcza3
A:342-525
2b
d1mcze3
E:342-525
2c
d1mczf3
F:342-525
2d
d1mczg3
G:342-525
2e
d1mczh3
H:342-525
2f
d1mczi3
I:342-525
2g
d1mczj3
J:342-525
2h
d1mczk3
K:342-525
2i
d1mczl3
L:342-525
2j
d1mczm3
M:342-525
2k
d1mczn3
N:342-525
2l
d1mczo3
O:342-525
2m
d1mczp3
P:342-525
2n
d1mczb3
B:342-525
2o
d1mczc3
C:342-525
2p
d1mczd3
D:342-525
Family
:
Pyruvate oxidase and decarboxylase Pyr module
(43)
Protein domain
:
Benzoylformate decarboxylase
(7)
Pseudomonas putida [TaxId: 303]
(7)
3a
d1mcza2
A:2-181
3b
d1mcze2
E:2-181
3c
d1mczf2
F:2-181
3d
d1mczg2
G:2-181
3e
d1mczh2
H:2-181
3f
d1mczi2
I:2-181
3g
d1mczj2
J:2-181
3h
d1mczk2
K:2-181
3i
d1mczl2
L:2-181
3j
d1mczm2
M:2-181
3k
d1mczn2
N:2-181
3l
d1mczo2
O:2-181
3m
d1mczp2
P:2-181
3n
d1mczb2
B:2-181
3o
d1mczc2
C:2-181
3p
d1mczd2
D:2-181
[
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]
CATH Domains
(2, 48)
Info
all CATH domains
1a: CATH_1mczA03 (A:342-524)
1b: CATH_1mczB03 (B:342-524)
1c: CATH_1mczC03 (C:342-524)
1d: CATH_1mczD03 (D:342-524)
1e: CATH_1mczE03 (E:342-524)
1f: CATH_1mczF03 (F:342-524)
1g: CATH_1mczG03 (G:342-524)
1h: CATH_1mczH03 (H:342-524)
1i: CATH_1mczI03 (I:342-524)
1j: CATH_1mczJ03 (J:342-524)
1k: CATH_1mczK03 (K:342-524)
1l: CATH_1mczL03 (L:342-524)
1m: CATH_1mczM03 (M:342-524)
1n: CATH_1mczN03 (N:342-524)
1o: CATH_1mczO03 (O:342-524)
1p: CATH_1mczP03 (P:342-524)
1q: CATH_1mczA02 (A:2-179)
1r: CATH_1mczB02 (B:2-179)
1s: CATH_1mczC02 (C:2-179)
1t: CATH_1mczD02 (D:2-179)
1u: CATH_1mczE02 (E:2-179)
1v: CATH_1mczF02 (F:2-179)
1w: CATH_1mczG02 (G:2-179)
1x: CATH_1mczH02 (H:2-179)
1y: CATH_1mczI02 (I:2-179)
1z: CATH_1mczJ02 (J:2-179)
1aa: CATH_1mczK02 (K:2-179)
1ab: CATH_1mczL02 (L:2-179)
1ac: CATH_1mczM02 (M:2-179)
1ad: CATH_1mczN02 (N:2-179)
1ae: CATH_1mczO02 (O:2-179)
1af: CATH_1mczP02 (P:2-179)
2a: CATH_1mczA01 (A:180-341)
2b: CATH_1mczB01 (B:180-341)
2c: CATH_1mczC01 (C:180-341)
2d: CATH_1mczD01 (D:180-341)
2e: CATH_1mczE01 (E:180-341)
2f: CATH_1mczF01 (F:180-341)
2g: CATH_1mczG01 (G:180-341)
2h: CATH_1mczH01 (H:180-341)
2i: CATH_1mczI01 (I:180-341)
2j: CATH_1mczJ01 (J:180-341)
2k: CATH_1mczK01 (K:180-341)
2l: CATH_1mczL01 (L:180-341)
2m: CATH_1mczM01 (M:180-341)
2n: CATH_1mczN01 (N:180-341)
2o: CATH_1mczO01 (O:180-341)
2p: CATH_1mczP01 (P:180-341)
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Topologies
(
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.970, no name defined]
(144)
Pseudomonas putida. Organism_taxid: 303.
(8)
1a
1mczA03
A:342-524
1b
1mczB03
B:342-524
1c
1mczC03
C:342-524
1d
1mczD03
D:342-524
1e
1mczE03
E:342-524
1f
1mczF03
F:342-524
1g
1mczG03
G:342-524
1h
1mczH03
H:342-524
1i
1mczI03
I:342-524
1j
1mczJ03
J:342-524
1k
1mczK03
K:342-524
1l
1mczL03
L:342-524
1m
1mczM03
M:342-524
1n
1mczN03
N:342-524
1o
1mczO03
O:342-524
1p
1mczP03
P:342-524
1q
1mczA02
A:2-179
1r
1mczB02
B:2-179
1s
1mczC02
C:2-179
1t
1mczD02
D:2-179
1u
1mczE02
E:2-179
1v
1mczF02
F:2-179
1w
1mczG02
G:2-179
1x
1mczH02
H:2-179
1y
1mczI02
I:2-179
1z
1mczJ02
J:2-179
1aa
1mczK02
K:2-179
1ab
1mczL02
L:2-179
1ac
1mczM02
M:2-179
1ad
1mczN02
N:2-179
1ae
1mczO02
O:2-179
1af
1mczP02
P:2-179
Homologous Superfamily
:
TPP-binding domain
(120)
Pseudomonas putida. Organism_taxid: 303.
(8)
2a
1mczA01
A:180-341
2b
1mczB01
B:180-341
2c
1mczC01
C:180-341
2d
1mczD01
D:180-341
2e
1mczE01
E:180-341
2f
1mczF01
F:180-341
2g
1mczG01
G:180-341
2h
1mczH01
H:180-341
2i
1mczI01
I:180-341
2j
1mczJ01
J:180-341
2k
1mczK01
K:180-341
2l
1mczL01
L:180-341
2m
1mczM01
M:180-341
2n
1mczN01
N:180-341
2o
1mczO01
O:180-341
2p
1mczP01
P:180-341
[
close CATH info
]
Pfam Domains
(3, 48)
Info
all PFAM domains
1a: PFAM_TPP_enzyme_M_1mczP01 (P:190-325)
1b: PFAM_TPP_enzyme_M_1mczP02 (P:190-325)
1c: PFAM_TPP_enzyme_M_1mczP03 (P:190-325)
1d: PFAM_TPP_enzyme_M_1mczP04 (P:190-325)
1e: PFAM_TPP_enzyme_M_1mczP05 (P:190-325)
1f: PFAM_TPP_enzyme_M_1mczP06 (P:190-325)
1g: PFAM_TPP_enzyme_M_1mczP07 (P:190-325)
1h: PFAM_TPP_enzyme_M_1mczP08 (P:190-325)
1i: PFAM_TPP_enzyme_M_1mczP09 (P:190-325)
1j: PFAM_TPP_enzyme_M_1mczP10 (P:190-325)
1k: PFAM_TPP_enzyme_M_1mczP11 (P:190-325)
1l: PFAM_TPP_enzyme_M_1mczP12 (P:190-325)
1m: PFAM_TPP_enzyme_M_1mczP13 (P:190-325)
1n: PFAM_TPP_enzyme_M_1mczP14 (P:190-325)
1o: PFAM_TPP_enzyme_M_1mczP15 (P:190-325)
1p: PFAM_TPP_enzyme_M_1mczP16 (P:190-325)
2a: PFAM_TPP_enzyme_C_1mczP17 (P:375-521)
2b: PFAM_TPP_enzyme_C_1mczP18 (P:375-521)
2c: PFAM_TPP_enzyme_C_1mczP19 (P:375-521)
2d: PFAM_TPP_enzyme_C_1mczP20 (P:375-521)
2e: PFAM_TPP_enzyme_C_1mczP21 (P:375-521)
2f: PFAM_TPP_enzyme_C_1mczP22 (P:375-521)
2g: PFAM_TPP_enzyme_C_1mczP23 (P:375-521)
2h: PFAM_TPP_enzyme_C_1mczP24 (P:375-521)
2i: PFAM_TPP_enzyme_C_1mczP25 (P:375-521)
2j: PFAM_TPP_enzyme_C_1mczP26 (P:375-521)
2k: PFAM_TPP_enzyme_C_1mczP27 (P:375-521)
2l: PFAM_TPP_enzyme_C_1mczP28 (P:375-521)
2m: PFAM_TPP_enzyme_C_1mczP29 (P:375-521)
2n: PFAM_TPP_enzyme_C_1mczP30 (P:375-521)
2o: PFAM_TPP_enzyme_C_1mczP31 (P:375-521)
2p: PFAM_TPP_enzyme_C_1mczP32 (P:375-521)
3a: PFAM_TPP_enzyme_N_1mczP33 (P:3-171)
3b: PFAM_TPP_enzyme_N_1mczP34 (P:3-171)
3c: PFAM_TPP_enzyme_N_1mczP35 (P:3-171)
3d: PFAM_TPP_enzyme_N_1mczP36 (P:3-171)
3e: PFAM_TPP_enzyme_N_1mczP37 (P:3-171)
3f: PFAM_TPP_enzyme_N_1mczP38 (P:3-171)
3g: PFAM_TPP_enzyme_N_1mczP39 (P:3-171)
3h: PFAM_TPP_enzyme_N_1mczP40 (P:3-171)
3i: PFAM_TPP_enzyme_N_1mczP41 (P:3-171)
3j: PFAM_TPP_enzyme_N_1mczP42 (P:3-171)
3k: PFAM_TPP_enzyme_N_1mczP43 (P:3-171)
3l: PFAM_TPP_enzyme_N_1mczP44 (P:3-171)
3m: PFAM_TPP_enzyme_N_1mczP45 (P:3-171)
3n: PFAM_TPP_enzyme_N_1mczP46 (P:3-171)
3o: PFAM_TPP_enzyme_N_1mczP47 (P:3-171)
3p: PFAM_TPP_enzyme_N_1mczP48 (P:3-171)
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Clans
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Families
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(
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Organisms
(
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(
)
Clan
:
FAD_DHS
(82)
Family
:
TPP_enzyme_M
(50)
Pseudomonas putida (Arthrobacter siderocapsulatus)
(5)
1a
TPP_enzyme_M-1mczP01
P:190-325
1b
TPP_enzyme_M-1mczP02
P:190-325
1c
TPP_enzyme_M-1mczP03
P:190-325
1d
TPP_enzyme_M-1mczP04
P:190-325
1e
TPP_enzyme_M-1mczP05
P:190-325
1f
TPP_enzyme_M-1mczP06
P:190-325
1g
TPP_enzyme_M-1mczP07
P:190-325
1h
TPP_enzyme_M-1mczP08
P:190-325
1i
TPP_enzyme_M-1mczP09
P:190-325
1j
TPP_enzyme_M-1mczP10
P:190-325
1k
TPP_enzyme_M-1mczP11
P:190-325
1l
TPP_enzyme_M-1mczP12
P:190-325
1m
TPP_enzyme_M-1mczP13
P:190-325
1n
TPP_enzyme_M-1mczP14
P:190-325
1o
TPP_enzyme_M-1mczP15
P:190-325
1p
TPP_enzyme_M-1mczP16
P:190-325
Clan
:
THDP-binding
(106)
Family
:
TPP_enzyme_C
(54)
Pseudomonas putida (Arthrobacter siderocapsulatus)
(5)
2a
TPP_enzyme_C-1mczP17
P:375-521
2b
TPP_enzyme_C-1mczP18
P:375-521
2c
TPP_enzyme_C-1mczP19
P:375-521
2d
TPP_enzyme_C-1mczP20
P:375-521
2e
TPP_enzyme_C-1mczP21
P:375-521
2f
TPP_enzyme_C-1mczP22
P:375-521
2g
TPP_enzyme_C-1mczP23
P:375-521
2h
TPP_enzyme_C-1mczP24
P:375-521
2i
TPP_enzyme_C-1mczP25
P:375-521
2j
TPP_enzyme_C-1mczP26
P:375-521
2k
TPP_enzyme_C-1mczP27
P:375-521
2l
TPP_enzyme_C-1mczP28
P:375-521
2m
TPP_enzyme_C-1mczP29
P:375-521
2n
TPP_enzyme_C-1mczP30
P:375-521
2o
TPP_enzyme_C-1mczP31
P:375-521
2p
TPP_enzyme_C-1mczP32
P:375-521
Family
:
TPP_enzyme_N
(54)
Pseudomonas putida (Arthrobacter siderocapsulatus)
(5)
3a
TPP_enzyme_N-1mczP33
P:3-171
3b
TPP_enzyme_N-1mczP34
P:3-171
3c
TPP_enzyme_N-1mczP35
P:3-171
3d
TPP_enzyme_N-1mczP36
P:3-171
3e
TPP_enzyme_N-1mczP37
P:3-171
3f
TPP_enzyme_N-1mczP38
P:3-171
3g
TPP_enzyme_N-1mczP39
P:3-171
3h
TPP_enzyme_N-1mczP40
P:3-171
3i
TPP_enzyme_N-1mczP41
P:3-171
3j
TPP_enzyme_N-1mczP42
P:3-171
3k
TPP_enzyme_N-1mczP43
P:3-171
3l
TPP_enzyme_N-1mczP44
P:3-171
3m
TPP_enzyme_N-1mczP45
P:3-171
3n
TPP_enzyme_N-1mczP46
P:3-171
3o
TPP_enzyme_N-1mczP47
P:3-171
3p
TPP_enzyme_N-1mczP48
P:3-171
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