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1MBZ
Biol. Unit 2
Info
Asym.Unit (169 KB)
Biol.Unit 1 (83 KB)
Biol.Unit 2 (83 KB)
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(1)
Title
:
BETA-LACTAM SYNTHETASE WITH TRAPPED INTERMEDIATE
Authors
:
M. T. Miller, B. O. Bachmann, C. A. Townsend, A. C. Rosenzweig
Date
:
04 Aug 02 (Deposition) - 23 Oct 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.47
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Clavulanic Acid, Asparagine Synthetase, Beta-Lactam Synthetase, Carboxyethyl Arginine, Deoxyguanidinoproclavaminic Acid, Hydrolase
(Keyword Search:
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Reference
:
M. T. Miller, B. O. Bachmann, C. A. Townsend, A. C. Rosenzweig
The Catalytic Cycle Of Beta -Lactam Synthetase Observed By X-Ray Crystallographic Snapshots
Proc. Natl. Acad. Sci. Usa V. 99 14752 2002
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
2a: ARGININE-N-METHYLCARBONYL PHOSPHOR... (IOTa)
2b: ARGININE-N-METHYLCARBONYL PHOSPHOR... (IOTb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
4a: PYROPHOSPHATE 2- (POPa)
4b: PYROPHOSPHATE 2- (POPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
1
Ligand/Ion
GLYCEROL
2
IOT
1
Ligand/Ion
ARGININE-N-METHYLCARBONYL PHOSPHORIC ACID 5'-ADENOSINEESTER
3
MG
-1
Ligand/Ion
MAGNESIUM ION
4
POP
1
Ligand/Ion
PYROPHOSPHATE 2-
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC7 (SOFTWARE)
4: AC8 (SOFTWARE)
5: BC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP B:253 , ASP B:351 , LYS B:443 , IOT B:603 , POP B:604 , HOH B:615
BINDING SITE FOR RESIDUE MG B 601
2
AC2
SOFTWARE
GLU B:280 , IOT B:603 , POP B:604 , HOH B:765 , HOH B:766 , HOH B:767
BINDING SITE FOR RESIDUE MG B 602
3
AC7
SOFTWARE
VAL B:247 , LEU B:248 , SER B:254 , VAL B:271 , MET B:273 , TYR B:326 , LEU B:333 , GLY B:347 , TYR B:348 , GLY B:349 , ASP B:351 , ILE B:352 , MET B:357 , ASP B:373 , LEU B:380 , GLU B:382 , LYS B:443 , MG B:601 , MG B:602 , POP B:604 , HOH B:615 , HOH B:638
BINDING SITE FOR RESIDUE IOT B 603
4
AC8
SOFTWARE
SER B:249 , GLY B:251 , ASP B:253 , SER B:254 , ASP B:351 , LYS B:423 , LYS B:443 , MG B:601 , MG B:602 , IOT B:603 , HOH B:614 , HOH B:615 , HOH B:767
BINDING SITE FOR RESIDUE POP B 604
5
BC1
SOFTWARE
SER B:278 , PRO B:329
BINDING SITE FOR RESIDUE GOL B 605
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1mbza2 (A:3-209)
1b: SCOP_d1mbzb2 (B:3-209)
2a: SCOP_d1mbza1 (A:210-507)
2b: SCOP_d1mbzb1 (B:210-508)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ntn hydrolase-like
(356)
Superfamily
:
N-terminal nucleophile aminohydrolases (Ntn hydrolases)
(352)
Family
:
Class II glutamine amidotransferases
(27)
Protein domain
:
beta-Lactam synthetase
(7)
Streptomyces clavuligerus [TaxId: 1901]
(5)
1a
d1mbza2
A:3-209
1b
d1mbzb2
B:3-209
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Adenine nucleotide alpha hydrolase-like
(440)
Superfamily
:
Adenine nucleotide alpha hydrolases-like
(110)
Family
:
N-type ATP pyrophosphatases
(44)
Protein domain
:
beta-Lactam synthetase
(7)
Streptomyces clavuligerus [TaxId: 1901]
(5)
2a
d1mbza1
A:210-507
2b
d1mbzb1
B:210-508
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1mbzB02 (B:211-505)
1b: CATH_1mbzA02 (A:211-505)
2a: CATH_1mbzB01 (B:4-210)
2b: CATH_1mbzA01 (A:4-210)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1
(328)
Streptomyces clavuligerus. Organism_taxid: 1901.
(5)
1a
1mbzB02
B:211-505
1b
1mbzA02
A:211-505
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1
(128)
Homologous Superfamily
:
Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1
(124)
Streptomyces clavuligerus. Organism_taxid: 1901.
(5)
2a
1mbzB01
B:4-210
2b
1mbzA01
A:4-210
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Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_Asn_synthase_1mbzB01 (B:389-443)
1b: PFAM_Asn_synthase_1mbzB02 (B:389-443)
1c: PFAM_Asn_synthase_1mbzB03 (B:389-443)
1d: PFAM_Asn_synthase_1mbzB04 (B:389-443)
2a: PFAM_GATase_7_1mbzB05 (B:62-163)
2b: PFAM_GATase_7_1mbzB06 (B:62-163)
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)
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Clan
:
HUP
(230)
Family
:
Asn_synthase
(5)
Streptomyces clavuligerus
(4)
1a
Asn_synthase-1mbzB01
B:389-443
1b
Asn_synthase-1mbzB02
B:389-443
1c
Asn_synthase-1mbzB03
B:389-443
1d
Asn_synthase-1mbzB04
B:389-443
Clan
:
NTN
(93)
Family
:
GATase_7
(4)
Streptomyces clavuligerus
(4)
2a
GATase_7-1mbzB05
B:62-163
2b
GATase_7-1mbzB06
B:62-163
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Chain B
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (169 KB)
Header - Asym.Unit
Biol.Unit 1 (83 KB)
Header - Biol.Unit 1
Biol.Unit 2 (83 KB)
Header - Biol.Unit 2
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