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Biol. Unit 2
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Asym.Unit (86 KB)
Biol.Unit 1 (41 KB)
Biol.Unit 2 (42 KB)
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(1)
Title
:
CRYSTAL STRUCTURE ANALYSIS OF CLPSN WITH TRANSITION METAL ION BOUND
Authors
:
F. Guo, L. Esser, S. K. Singh, M. R. Maurizi, D. Xia
Date
:
03 Aug 02 (Deposition) - 11 Dec 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Protein Binding, Adaptors, Hsp100/Clp Chaperone, Aaa+ Family, Atp- Dependent Protease
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Guo, L. Esser, S. K. Singh, M. R. Maurizi, D. Xia
Crystal Structure Of The Heterodimeric Complex Of The Adaptor, Clps, With The N-Domain Of The Aaa+ Chaperone, Clp
J. Biol. Chem. V. 277 46753 2002
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
3a: BIS-(2-HYDROXYETHYL)AMINO-TRIS(HYD... (YBTa)
3b: BIS-(2-HYDROXYETHYL)AMINO-TRIS(HYD... (YBTb)
3c: BIS-(2-HYDROXYETHYL)AMINO-TRIS(HYD... (YBTc)
3d: BIS-(2-HYDROXYETHYL)AMINO-TRIS(HYD... (YBTd)
3e: BIS-(2-HYDROXYETHYL)AMINO-TRIS(HYD... (YBTe)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
GOL
2
Ligand/Ion
GLYCEROL
3
YBT
3
Ligand/Ion
BIS-(2-HYDROXYETHYL)AMINO-TRIS(HYDROXYMETHYL)METHANEYTTRIUM
4
ZN
-1
Ligand/Ion
ZINC ION
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC3 (SOFTWARE)
3: AC4 (SOFTWARE)
4: AC6 (SOFTWARE)
5: AC7 (SOFTWARE)
6: AC8 (SOFTWARE)
7: BC1 (SOFTWARE)
8: BC2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN B:3 , LEU B:6 , ASN B:37 , THR B:104 , GLY B:105
BINDING SITE FOR RESIDUE CL B 143
2
AC3
SOFTWARE
HIS B:20 , HIS B:22 , GLU B:63 , HOH B:216
BINDING SITE FOR RESIDUE ZN B 211
3
AC4
SOFTWARE
ASN B:3 , GLN B:4 , GLU B:5 , GLU B:102 , HOH B:250 , HOH B:262 , GLU C:41
BINDING SITE FOR RESIDUE YBT B 212
4
AC6
SOFTWARE
ARG B:41 , GLU B:42 , GLU B:45 , HOH B:218 , HOH B:241 , HOH B:272
BINDING SITE FOR RESIDUE YBT B 213
5
AC7
SOFTWARE
MET A:1 , GLU A:7 , ASP D:54 , GLU D:56 , HOH D:140
BINDING SITE FOR RESIDUE YBT A 212
6
AC8
SOFTWARE
GLU A:19 , ASN D:34 , ASP D:35 , ASP D:36 , TYR D:37 , THR D:38 , MET D:40 , MET D:62 , HIS D:66
BINDING SITE FOR RESIDUE YBT D 107
7
BC1
SOFTWARE
GLU B:117 , HOH B:231 , HOH B:242
BINDING SITE FOR RESIDUE GOL B 214
8
BC2
SOFTWARE
GLU B:128 , ASP B:133
BINDING SITE FOR RESIDUE GOL B 215
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1mbxa_ (A:)
1b: SCOP_d1mbxb_ (B:)
2a: SCOP_d1mbxc_ (C:)
2b: SCOP_d1mbxd_ (D:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Double Clp-N motif
(13)
Superfamily
:
Double Clp-N motif
(13)
Family
:
Double Clp-N motif
(13)
Protein domain
:
N-terminal, ClpS-binding domain of ClpA, an Hsp100 chaperone
(8)
Escherichia coli [TaxId: 562]
(8)
1a
d1mbxa_
A:
1b
d1mbxb_
B:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
ClpS-like
(30)
Superfamily
:
ClpS-like
(30)
Family
:
Adaptor protein ClpS (YljA)
(17)
Protein domain
:
Adaptor protein ClpS (YljA)
(8)
Escherichia coli [TaxId: 562]
(8)
2a
d1mbxc_
C:
2b
d1mbxd_
D:
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1mbxD00 (D:21-106)
1b: CATH_1mbxC00 (C:20-106)
2a: CATH_1mbxA00 (A:1-142)
2b: CATH_1mbxB00 (B:1-142)
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Ribosomal Protein L30; Chain: A,
(164)
Homologous Superfamily
:
[code=3.30.1390.10, no name defined]
(20)
Escherichia coli. Organism_taxid: 562.
(7)
1a
1mbxD00
D:21-106
1b
1mbxC00
C:20-106
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Double Clp-N motif
(16)
Homologous Superfamily
:
Double Clp-N motif
(16)
Escherichia coli. Organism_taxid: 562.
(8)
2a
1mbxA00
A:1-142
2b
1mbxB00
B:1-142
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_ClpS_1mbxD01 (D:22-103)
1b: PFAM_ClpS_1mbxD02 (D:22-103)
2a: PFAM_Clp_N_1mbxB01 (B:13-63)
2b: PFAM_Clp_N_1mbxB02 (B:13-63)
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Clans
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)
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)
(
)
Clan
:
no clan defined [family: ClpS]
(10)
Family
:
ClpS
(10)
Escherichia coli (strain K12)
(10)
1a
ClpS-1mbxD01
D:22-103
1b
ClpS-1mbxD02
D:22-103
Clan
:
no clan defined [family: Clp_N]
(16)
Family
:
Clp_N
(16)
Escherichia coli (strain K12)
(11)
2a
Clp_N-1mbxB01
B:13-63
2b
Clp_N-1mbxB02
B:13-63
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Asymmetric Unit 1
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