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Asym. Unit
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Asym.Unit (131 KB)
Biol.Unit 1 (125 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ASPARTATE SEMIALDEHYDE DEHYDROGENASE FROM VIBRIO CHOLERAE WITH NADP AND S-METHYL-L-CYSTEINE SULFOXIDE
Authors
:
J. Blanco, R. A. Moore, V. Kabaleeswaran, R. E. Viola
Date
:
02 Aug 02 (Deposition) - 07 Jan 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.84
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Enzyme, Aspartate-Semialdehyde Dehydrogenase, Complex, Vibrio Cholerae, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Blanco, R. A. Moore, V. Kabaleeswaran, R. E. Viola
A Structural Basis For The Mechanism Of Aspartate-Beta-Semialdehyde Dehydrogenase From Vibrio Cholerae
Protein Sci. V. 12 27 2003
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: CYSTEINE (CYSa)
1b: CYSTEINE (CYSb)
2a: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPa)
2b: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CYS
2
Mod. Amino Acid
CYSTEINE
2
NDP
2
Ligand/Ion
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:133 , CYS A:134 , GLN A:161 , GLY A:165 , GLU A:240 , ARG A:267 , HIS A:274 , GLN A:350 , NDP A:502
BINDING SITE FOR RESIDUE CYS A 500
2
AC2
SOFTWARE
ASN B:133 , CYS B:134 , GLN B:161 , GLY B:165 , GLU B:240 , ARG B:267 , HIS B:274 , GLN B:350 , NDP B:503
BINDING SITE FOR RESIDUE CYS B 501
3
AC3
SOFTWARE
GLY A:7 , ARG A:9 , GLY A:10 , MET A:11 , VAL A:12 , THR A:36 , SER A:37 , CYS A:71 , GLN A:72 , GLY A:73 , ALA A:97 , SER A:164 , GLY A:165 , GLN A:350 , LEU A:351 , GLY A:354 , CYS A:500 , HOH A:510 , HOH A:523 , HOH A:526 , HOH A:527 , HOH A:562 , HOH A:643 , HOH A:665 , HOH A:687
BINDING SITE FOR RESIDUE NDP A 502
4
AC4
SOFTWARE
PRO A:192 , GLY B:7 , ARG B:9 , GLY B:10 , MET B:11 , VAL B:12 , SER B:35 , THR B:36 , SER B:37 , CYS B:71 , GLN B:72 , GLY B:73 , ALA B:97 , SER B:164 , GLY B:165 , GLN B:350 , LEU B:351 , GLY B:354 , CYS B:501 , HOH B:537 , HOH B:538 , HOH B:553 , HOH B:663 , HOH B:674 , HOH B:679
BINDING SITE FOR RESIDUE NDP B 503
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ASD (A:261-275,B:261-275)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ASD
PS01103
Aspartate-semialdehyde dehydrogenase signature.
DHAS1_VIBCH
261-275
2
A:261-275
B:261-275
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1mb4a2 (A:133-354)
1b: SCOP_d1mb4b2 (B:133-354)
2a: SCOP_d1mb4a1 (A:1-132,A:355-369)
2b: SCOP_d1mb4b1 (B:1-132,B:355-369)
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)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FwdE/GAPDH domain-like
(188)
Superfamily
:
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
(179)
Family
:
GAPDH-like
(99)
Protein domain
:
Aspartate beta-semialdehyde dehydrogenase
(31)
Vibrio cholerae [TaxId: 666]
(4)
1a
d1mb4a2
A:133-354
1b
d1mb4b2
B:133-354
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
(179)
Protein domain
:
Aspartate beta-semialdehyde dehydrogenase
(31)
Vibrio cholerae [TaxId: 666]
(4)
2a
d1mb4a1
A:1-132,A:355-369
2b
d1mb4b1
B:1-132,B:355-369
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1mb4A02 (A:134-350)
1b: CATH_1mb4B02 (B:134-350)
2a: CATH_1mb4A01 (A:1-133,A:351-369)
2b: CATH_1mb4B01 (B:1-133,B:351-369)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Dihydrodipicolinate Reductase; domain 2
(182)
Homologous Superfamily
:
Dihydrodipicolinate Reductase; domain 2
(178)
Vibrio cholerae. Organism_taxid: 666.
(3)
1a
1mb4A02
A:134-350
1b
1mb4B02
B:134-350
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Vibrio cholerae. Organism_taxid: 666.
(3)
2a
1mb4A01
A:1-133,A:351-369
2b
1mb4B01
B:1-133,B:351-369
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Pfam Domains
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