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1MAB
Asym. Unit
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Asym.Unit (181 KB)
Biol.Unit 1 (471 KB)
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(1)
Title
:
RAT LIVER F1-ATPASE
Authors
:
M. A. Bianchet, L. M. Amzel
Date
:
06 Aug 98 (Deposition) - 30 Sep 98 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,G
Biol. Unit 1: A,B,G (3x)
Keywords
:
Atp Synthase, Fof1-Atpase, Oxidative Phosphorylation, Mitochondria, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. A. Bianchet, J. Hullihen, P. L. Pedersen, L. M. Amzel
The 2. 8-A Structure Of Rat Liver F1-Atpase: Configuration Of A Critical Intermediate In Atp Synthesis/Hydrolysis.
Proc. Natl. Acad. Sci. Usa V. 95 11065 1998
(for further references see the
PDB file header
)
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Hetero Components
(4, 4)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
2a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
3a: MAGNESIUM ION (MGa)
4a: PHOSPHATE ION (PO4a)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
ATP
1
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
3
MG
1
Ligand/Ion
MAGNESIUM ION
4
PO4
1
Ligand/Ion
PHOSPHATE ION
[
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]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:344 , ARG A:373 , GLY B:159 , LYS B:162 , THR B:163 , GLU B:188 , ARG B:189 , ASN B:257 , ADP B:604
BINDING SITE FOR RESIDUE PO4 B 601
2
AC2
SOFTWARE
THR A:176 , ATP A:603 , HOH A:635
BINDING SITE FOR RESIDUE MG A 602
3
AC3
SOFTWARE
GLN A:172 , THR A:173 , GLY A:174 , LYS A:175 , THR A:176 , SER A:177 , PHE A:357 , ARG A:362 , GLY A:431 , GLN A:432 , MG A:602 , HOH A:635 , HOH A:636 , SER B:355 , ASP B:359
BINDING SITE FOR RESIDUE ATP A 603
4
AC4
SOFTWARE
VAL A:371 , ARG A:373 , GLY B:159 , VAL B:160 , GLY B:161 , LYS B:162 , THR B:163 , VAL B:164 , ARG B:189 , TYR B:345 , PRO B:417 , PHE B:418 , ALA B:421 , PHE B:424 , PO4 B:601
BINDING SITE FOR RESIDUE ADP B 604
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: ATPASE_GAMMA (G:255-268)
2: ATPASE_ALPHA_BETA (B:346-355,A:363-372)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ATPASE_GAMMA
PS00153
ATP synthase gamma subunit signature.
ATPG_RAT
258-271
1
G:255-268
2
ATPASE_ALPHA_BETA
PS00152
ATP synthase alpha and beta subunits signature.
ATPB_RAT
396-405
1
B:346-355
ATPA_RAT
406-415
1
A:363-372
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(7, 7)
Info
All SCOP Domains
1a: SCOP_d1maba1 (A:380-510)
2a: SCOP_d1mabb1 (B:358-477)
3a: SCOP_d1maba2 (A:10-94)
4a: SCOP_d1mabb2 (B:1-81)
5a: SCOP_d1maba3 (A:95-379)
6a: SCOP_d1mabb3 (B:82-357)
7a: SCOP_d1mabg_ (G:)
View:
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Classes
(
)
(
)
Folds
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(
)
Superfamilies
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Left-handed superhelix
(73)
Superfamily
:
C-terminal domain of alpha and beta subunits of F1 ATP synthase
(55)
Family
:
C-terminal domain of alpha and beta subunits of F1 ATP synthase
(41)
Protein domain
:
F1 ATP synthase alpha subunit, domain 3
(19)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(1)
1a
d1maba1
A:380-510
Protein domain
:
F1 ATP synthase beta subunit, domain 3
(22)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(1)
2a
d1mabb1
B:358-477
Class
:
All beta proteins
(24004)
Fold
:
Domain of alpha and beta subunits of F1 ATP synthase-like
(89)
Superfamily
:
N-terminal domain of alpha and beta subunits of F1 ATP synthase
(55)
Family
:
N-terminal domain of alpha and beta subunits of F1 ATP synthase
(41)
Protein domain
:
F1 ATP synthase alpha subunit, domain 1
(19)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(1)
3a
d1maba2
A:10-94
Protein domain
:
F1 ATP synthase beta subunit, domain 1
(22)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(1)
4a
d1mabb2
B:1-81
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
RecA protein-like (ATPase-domain)
(159)
Protein domain
:
Central domain of alpha subunit of F1 ATP synthase
(19)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(1)
5a
d1maba3
A:95-379
Protein domain
:
Central domain of beta subunit of F1 ATP synthase
(22)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(1)
6a
d1mabb3
B:82-357
Fold
:
Pyruvate kinase C-terminal domain-like
(59)
Superfamily
:
ATP synthase (F1-ATPase), gamma subunit
(29)
Family
:
ATP synthase (F1-ATPase), gamma subunit
(22)
Protein domain
:
ATP synthase (F1-ATPase), gamma subunit
(22)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(2)
7a
d1mabg_
G:
[
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CATH Domains
(5, 6)
Info
all CATH domains
1a: CATH_1mabB02 (B:82-357)
1b: CATH_1mabA02 (A:94-379)
2a: CATH_1mabB03 (B:358-475)
3a: CATH_1mabA03 (A:380-509)
4a: CATH_1mabA01 (A:24-93)
5a: CATH_1mabB01 (B:9-81)
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)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Norway rat (Rattus norvegicus)
(38)
1a
1mabB02
B:82-357
1b
1mabA02
A:94-379
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3
(32)
Homologous Superfamily
:
Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3
(32)
Norway rat (Rattus norvegicus)
(2)
2a
1mabB03
B:358-475
Architecture
:
Up-down Bundle
(3216)
Topology
:
Lysin
(39)
Homologous Superfamily
:
[code=1.20.150.20, no name defined]
(33)
Norway rat (Rattus norvegicus)
(2)
3a
1mabA03
A:380-509
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Elongation Factor Tu (Ef-tu); domain 3
(323)
Homologous Superfamily
:
[code=2.40.30.20, no name defined]
(40)
Norway rat (Rattus norvegicus)
(2)
4a
1mabA01
A:24-93
Topology
:
Thrombin, subunit H
(1535)
Homologous Superfamily
:
[code=2.40.10.170, no name defined]
(33)
Norway rat (Rattus norvegicus)
(2)
5a
1mabB01
B:9-81
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Pfam Domains
(4, 7)
Info
all PFAM domains
1a: PFAM_ATP_synt_ab_N_1mabA01 (A:24-92)
1b: PFAM_ATP_synt_ab_N_1mabB01 (B:13-79)
2a: PFAM_ATP_synt_ab_1mabA02 (A:148-372)
2b: PFAM_ATP_synt_ab_1mabB02 (B:135-355)
3a: PFAM_ATP_synt_1mabG01 (G:2-269)
4a: PFAM_ATP_synt_ab_C_1mabA03 (A:384-486)
4b: PFAM_ATP_synt_ab_C_1mabB03 (B:368-477)
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Clans
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Families
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)
Organisms
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)
(
)
Clan
:
HAS-barrel
(27)
Family
:
ATP-synt_ab_N
(27)
Rattus norvegicus (Rat)
(1)
1a
ATP-synt_ab_N-1mabA01
A:24-92
1b
ATP-synt_ab_N-1mabB01
B:13-79
Clan
:
P-loop_NTPase
(1112)
Family
:
ATP-synt_ab
(44)
Rattus norvegicus (Rat)
(1)
2a
ATP-synt_ab-1mabA02
A:148-372
2b
ATP-synt_ab-1mabB02
B:135-355
Clan
:
no clan defined [family: ATP-synt]
(22)
Family
:
ATP-synt
(22)
Rattus norvegicus (Rat)
(1)
3a
ATP-synt-1mabG01
G:2-269
Clan
:
no clan defined [family: ATP-synt_ab_C]
(32)
Family
:
ATP-synt_ab_C
(32)
Rattus norvegicus (Rat)
(1)
4a
ATP-synt_ab_C-1mabA03
A:384-486
4b
ATP-synt_ab_C-1mabB03
B:368-477
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