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1M9Y
Asym. Unit
Info
Asym.Unit (218 KB)
Biol.Unit 1 (54 KB)
Biol.Unit 2 (58 KB)
Biol.Unit 3 (56 KB)
Biol.Unit 4 (56 KB)
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(1)
Title
:
X-RAY CRYSTAL STRUCTURE OF CYCLOPHILIN A/HIV-1 CA N-TERMINAL DOMAIN (1-146) M-TYPE H87A,G89A COMPLEX.
Authors
:
B. R. Howard, F. F. Vajdos, S. Li, W. I. Sundquist, C. P. Hill
Date
:
30 Jul 02 (Deposition) - 27 May 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,C (1x)
Biol. Unit 3: E,H (1x)
Biol. Unit 4: F,G (1x)
Keywords
:
Capsid, Hiv-1, Cyclophilin A, Rotamase, Isomerase/Viral Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. R. Howard, F. F. Vajdos, S. Li, W. I. Sundquist, C. P. Hill
Structural Insights Into The Catalytic Mechanism Of Cyclophilin A
Nat. Struct. Biol. V. 10 475 2003
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: CSA_PPIASE_2 (A:7-163,B:7-163,E:7-163,F:7-163)
2: CSA_PPIASE_1 (A:48-65,B:48-65,E:48-65,F:48-65)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CSA_PPIASE_2
PS50072
Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.
PPIA_HUMAN
7-163
4
A:7-163
B:7-163
E:7-163
F:7-163
2
CSA_PPIASE_1
PS00170
Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.
PPIA_HUMAN
48-65
4
A:48-65
B:48-65
E:48-65
F:48-65
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1m9yc_ (C:)
1b: SCOP_d1m9yd_ (D:)
1c: SCOP_d1m9yg_ (G:)
1d: SCOP_d1m9yh_ (H:)
2a: SCOP_d1m9ya_ (A:)
2b: SCOP_d1m9yb_ (B:)
2c: SCOP_d1m9ye_ (E:)
2d: SCOP_d1m9yf_ (F:)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
Retrovirus capsid protein, N-terminal core domain
(53)
Superfamily
:
Retrovirus capsid protein, N-terminal core domain
(53)
Family
:
Retrovirus capsid protein, N-terminal core domain
(51)
Protein domain
:
HIV-1 capsid protein
(28)
Human immunodeficiency virus type 1 [TaxId: 11676]
(28)
1a
d1m9yc_
C:
1b
d1m9yd_
D:
1c
d1m9yg_
G:
1d
d1m9yh_
H:
Class
:
All beta proteins
(24004)
Fold
:
Cyclophilin-like
(169)
Superfamily
:
Cyclophilin-like
(169)
Family
:
Cyclophilin (peptidylprolyl isomerase)
(160)
Protein domain
:
Cyclophilin (eukaryotic)
(77)
Human (Homo sapiens), variant A [TaxId: 9606]
(58)
2a
d1m9ya_
A:
2b
d1m9yb_
B:
2c
d1m9ye_
E:
2d
d1m9yf_
F:
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1m9yD00 (D:12-146)
1b: CATH_1m9yH00 (H:12-146)
1c: CATH_1m9yC00 (C:1-146)
1d: CATH_1m9yG00 (G:1-146)
2a: CATH_1m9yA00 (A:1-165)
2b: CATH_1m9yE00 (E:1-165)
2c: CATH_1m9yB00 (B:2-165)
2d: CATH_1m9yF00 (F:2-165)
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Organisms
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)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Human Immunodeficiency Virus Type 1 Capsid Protein
(30)
Homologous Superfamily
:
Human Immunodeficiency Virus Type 1 Capsid Protein
(30)
Human (Homo sapiens)
(8)
1a
1m9yD00
D:12-146
1b
1m9yH00
H:12-146
1c
1m9yC00
C:1-146
1d
1m9yG00
G:1-146
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Cyclophilin
(95)
Homologous Superfamily
:
Cyclophilin
(95)
Human (Homo sapiens)
(58)
2a
1m9yA00
A:1-165
2b
1m9yE00
E:1-165
2c
1m9yB00
B:2-165
2d
1m9yF00
F:2-165
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_Pro_isomerase_1m9yF01 (F:7-163)
1b: PFAM_Pro_isomerase_1m9yF02 (F:7-163)
1c: PFAM_Pro_isomerase_1m9yF03 (F:7-163)
1d: PFAM_Pro_isomerase_1m9yF04 (F:7-163)
2a: PFAM_Gag_p24_1m9yH01 (H:17-146)
2b: PFAM_Gag_p24_1m9yH02 (H:17-146)
2c: PFAM_Gag_p24_1m9yH03 (H:17-146)
2d: PFAM_Gag_p24_1m9yH04 (H:17-146)
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Clan
:
Cyclophil-like
(65)
Family
:
Pro_isomerase
(53)
Homo sapiens (Human)
(42)
1a
Pro_isomerase-1m9yF01
F:7-163
1b
Pro_isomerase-1m9yF02
F:7-163
1c
Pro_isomerase-1m9yF03
F:7-163
1d
Pro_isomerase-1m9yF04
F:7-163
Clan
:
Viral_Gag
(25)
Family
:
Gag_p24
(24)
Human immunodeficiency virus 1
(7)
2a
Gag_p24-1m9yH01
H:17-146
2b
Gag_p24-1m9yH02
H:17-146
2c
Gag_p24-1m9yH03
H:17-146
2d
Gag_p24-1m9yH04
H:17-146
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Show PDB file:
Asym.Unit (218 KB)
Header - Asym.Unit
Biol.Unit 1 (54 KB)
Header - Biol.Unit 1
Biol.Unit 2 (58 KB)
Header - Biol.Unit 2
Biol.Unit 3 (56 KB)
Header - Biol.Unit 3
Biol.Unit 4 (56 KB)
Header - Biol.Unit 4
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