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Asym. Unit
Info
Asym.Unit (145 KB)
Biol.Unit 1 (140 KB)
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(1)
Title
:
HUMAN ENDOTHELIAL NITRIC OXIDE SYNTHASE WITH 7-NITROINDAZOLE BOUND
Authors
:
R. J. Rosenfeld, E. D. Garcin, K. Panda, G. Andersson, A. Aberg, A. V. Wallace, D. J. Stuehr, J. A. Tainer, E. D. Getzoff
Date
:
29 Jul 02 (Deposition) - 14 Aug 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.01
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. J. Rosenfeld, E. D. Garcin, K. Panda, G. Andersson, A. Aberg, A. V. Wallace, G. M. Morris, A. J. Olson, D. J. Stuehr, J. A. Tainer, E. D. Getzoff
Conformational Changes In Nitric Oxide Synthases Induced By Chlorzoxazone And Nitroindazoles: Crystallographic And Computational Analyses Of Inhibitor Potency
Biochemistry V. 41 13915 2002
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: 7-NITROINDAZOLE (7NIa)
1b: 7-NITROINDAZOLE (7NIb)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
7NI
2
Ligand/Ion
7-NITROINDAZOLE
2
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
ZN
1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:94 , CYS A:99 , CYS B:94 , CYS B:99
BINDING SITE FOR RESIDUE ZN A 903
2
AC2
SOFTWARE
TRP A:178 , ARG A:183 , CYS A:184 , PHE A:353 , SER A:354 , TRP A:356 , GLU A:361 , TRP A:447 , TYR A:475 , 7NI A:906 , HOH A:937 , HOH A:1104
BINDING SITE FOR RESIDUE HEM A 901
3
AC3
SOFTWARE
TRP B:178 , ARG B:183 , CYS B:184 , PHE B:353 , SER B:354 , TRP B:356 , MET B:358 , GLU B:361 , TRP B:447 , PHE B:473 , TYR B:475 , 7NI B:907 , HOH B:995 , HOH B:1072
BINDING SITE FOR RESIDUE HEM B 901
4
AC4
SOFTWARE
PRO A:334 , VAL A:336 , GLY A:355 , TRP A:356 , TYR A:357 , MET A:358 , GLU A:361 , HEM A:901
BINDING SITE FOR RESIDUE 7NI A 906
5
AC5
SOFTWARE
PRO B:334 , VAL B:336 , GLY B:355 , TRP B:356 , TYR B:357 , MET B:358 , GLU B:361 , HEM B:901
BINDING SITE FOR RESIDUE 7NI B 907
[
close Site info
]
SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_008037 (E298D, chain A/B, )
2: VAR_036303 (R474C, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_008037
E
298
D
NOS3_HUMAN
Polymorphism
1799983
A/B
E
298
D
2
UniProt
VAR_036303
R
474
C
NOS3_HUMAN
Unclassified
---
A/B
R
474
C
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: NOS (A:183-190,B:183-190)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NOS
PS60001
Nitric oxide synthase (NOS) signature.
NOS3_HUMAN
183-190
2
A:183-190
B:183-190
[
close PROSITE info
]
Exons
(10, 20)
Info
All Exons
Exon 1.3 (A:67-90 | B:67-90)
Exon 1.4 (A:91-140 (gaps) | B:91-140 (gaps))
Exon 1.5 (A:140-194 | B:140-194)
Exon 1.6 (A:195-225 | B:195-225)
Exon 1.7 (A:225-272 | B:225-272)
Exon 1.8 (A:273-319 | B:273-319)
Exon 1.9 (A:319-377 | B:319-377)
Exon 1.10 (A:378-411 | B:378-411)
Exon 1.11 (A:412-476 | B:412-476)
Exon 1.12 (A:477-480 | B:477-481)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.2a/1.3
02: Boundary 1.3/1.4
03: Boundary 1.4/1.5
04: Boundary 1.5/1.6
05: Boundary 1.6/1.7
06: Boundary 1.7/1.8
07: Boundary 1.8/1.9
08: Boundary 1.9/1.10
09: Boundary 1.10/1.11
10: Boundary 1.11/1.12
11: Boundary 1.12/1.13a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000297494
1a
ENSE00001851539
chr7:
150688083-150688388
306
NOS3_HUMAN
-
0
0
-
-
1.2a
ENST00000297494
2a
ENSE00001141361
chr7:
150690841-150691049
209
NOS3_HUMAN
1-53
53
0
-
-
1.3
ENST00000297494
3
ENSE00001088156
chr7:
150692291-150692402
112
NOS3_HUMAN
53-90
38
2
A:67-90
B:67-90
24
24
1.4
ENST00000297494
4
ENSE00001088160
chr7:
150693492-150693640
149
NOS3_HUMAN
91-140
50
2
A:91-140 (gaps)
B:91-140 (gaps)
50
50
1.5
ENST00000297494
5
ENSE00001088158
chr7:
150693851-150694013
163
NOS3_HUMAN
140-194
55
2
A:140-194
B:140-194
55
55
1.6
ENST00000297494
6
ENSE00001088152
chr7:
150695445-150695536
92
NOS3_HUMAN
195-225
31
2
A:195-225
B:195-225
31
31
1.7
ENST00000297494
7
ENSE00001088131
chr7:
150695627-150695768
142
NOS3_HUMAN
225-272
48
2
A:225-272
B:225-272
48
48
1.8
ENST00000297494
8
ENSE00001088139
chr7:
150696034-150696173
140
NOS3_HUMAN
273-319
47
2
A:273-319
B:273-319
47
47
1.9
ENST00000297494
9
ENSE00001088150
chr7:
150696278-150696452
175
NOS3_HUMAN
319-377
59
2
A:319-377
B:319-377
59
59
1.10
ENST00000297494
10
ENSE00001088154
chr7:
150697586-150697687
102
NOS3_HUMAN
378-411
34
2
A:378-411
B:378-411
34
34
1.11
ENST00000297494
11
ENSE00001088133
chr7:
150698319-150698513
195
NOS3_HUMAN
412-476
65
2
A:412-476
B:412-476
65
65
1.12
ENST00000297494
12
ENSE00001088163
chr7:
150698632-150698705
74
NOS3_HUMAN
477-501
25
2
A:477-480
B:477-481
4
5
1.13a
ENST00000297494
13a
ENSE00001088143
chr7:
150698909-150699053
145
NOS3_HUMAN
501-549
49
0
-
-
1.14
ENST00000297494
14
ENSE00001088146
chr7:
150699288-150699392
105
NOS3_HUMAN
550-584
35
0
-
-
1.17
ENST00000297494
17
ENSE00001088120
chr7:
150703515-150703582
68
NOS3_HUMAN
585-607
23
0
-
-
1.18
ENST00000297494
18
ENSE00001088124
chr7:
150703977-150704093
117
NOS3_HUMAN
607-646
40
0
-
-
1.19
ENST00000297494
19
ENSE00001088128
chr7:
150704190-150704364
175
NOS3_HUMAN
646-704
59
0
-
-
1.20b
ENST00000297494
20b
ENSE00001088161
chr7:
150706018-150706150
133
NOS3_HUMAN
705-749
45
0
-
-
1.21b
ENST00000297494
21b
ENSE00001088141
chr7:
150706277-150706355
79
NOS3_HUMAN
749-775
27
0
-
-
1.22b
ENST00000297494
22b
ENSE00001088117
chr7:
150706486-150706673
188
NOS3_HUMAN
775-838
64
0
-
-
1.23
ENST00000297494
23
ENSE00001088144
chr7:
150707203-150707375
173
NOS3_HUMAN
838-895
58
0
-
-
1.24c
ENST00000297494
24c
ENSE00001088137
chr7:
150707685-150707895
211
NOS3_HUMAN
896-966
71
0
-
-
1.24d
ENST00000297494
24d
ENSE00001088135
chr7:
150707987-150708074
88
NOS3_HUMAN
966-995
30
0
-
-
1.26b
ENST00000297494
26b
ENSE00001088114
chr7:
150709439-150709560
122
NOS3_HUMAN
995-1036
42
0
-
-
1.27d
ENST00000297494
27d
ENSE00001088122
chr7:
150710319-150710467
149
NOS3_HUMAN
1036-1085
50
0
-
-
1.28a
ENST00000297494
28a
ENSE00001088159
chr7:
150710812-150711006
195
NOS3_HUMAN
1086-1150
65
0
-
-
1.28g
ENST00000297494
28g
ENSE00001141355
chr7:
150711096-150711676
581
NOS3_HUMAN
1151-1203
53
0
-
-
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1m9ka_ (A:)
1b: SCOP_d1m9kb_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Nitric oxide (NO) synthase oxygenase domain
(313)
Superfamily
:
Nitric oxide (NO) synthase oxygenase domain
(313)
Family
:
Nitric oxide (NO) synthase oxygenase domain
(313)
Protein domain
:
Nitric oxide (NO) synthase oxygenase domain
(298)
Human (Homo sapiens) [TaxId: 9606]
(10)
1a
d1m9ka_
A:
1b
d1m9kb_
B:
[
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]
CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1m9kA03 (A:312-334,A:357-422)
1b: CATH_1m9kB03 (B:312-334,B:357-422)
2a: CATH_1m9kA01 (A:82-199,A:226-236,A:340-354,A:424-448)
2b: CATH_1m9kB01 (B:82-199,B:226-236,B:340-354,B:424-448)
3a: CATH_1m9kA02 (A:200-225,A:240-311,A:475-479)
3b: CATH_1m9kB02 (B:200-225,B:240-311,B:475-479)
View:
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Classes
(
)
(
)
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(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Bovine Endothelial Nitric Oxide Synthase Heme Domain; Chain: A,domain 3
(105)
Homologous Superfamily
:
Nitric Oxide Synthase; Chain A, domain 3
(105)
Human (Homo sapiens)
(9)
1a
1m9kA03
A:312-334,A:357-422
1b
1m9kB03
B:312-334,B:357-422
Topology
:
Nitric Oxide Synthase; Chain A, domain 1
(105)
Homologous Superfamily
:
Nitric Oxide Synthase; Chain A, domain 1
(105)
Human (Homo sapiens)
(9)
2a
1m9kA01
A:82-199,A:226-236,A:340-354,A:424-448
2b
1m9kB01
B:82-199,B:226-236,B:340-354,B:424-448
Topology
:
Nitric Oxide Synthase;Heme Domain; Chain A, domain 2
(105)
Homologous Superfamily
:
Nitric Oxide Synthase;Heme Domain;Chain A domain 2
(105)
Human (Homo sapiens)
(9)
3a
1m9kA02
A:200-225,A:240-311,A:475-479
3b
1m9kB02
B:200-225,B:240-311,B:475-479
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_NO_synthase_1m9kB01 (B:120-481)
1b: PFAM_NO_synthase_1m9kB02 (B:120-481)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: NO_synthase]
(140)
Family
:
NO_synthase
(140)
Homo sapiens (Human)
(7)
1a
NO_synthase-1m9kB01
B:120-481
1b
NO_synthase-1m9kB02
B:120-481
[
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