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1M8X
Biol. Unit 1
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Asym.Unit (132 KB)
Biol.Unit 1 (67 KB)
Biol.Unit 2 (64 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE PUMILIO-HOMOLOGY DOMAIN FROM HUMAN PUMILIO1 IN COMPLEX WITH NRE1-14 RNA
Authors
:
X. Wang, J. Mclachlan, P. D. Zamore, T. M. T. Hall
Date
:
26 Jul 02 (Deposition) - 25 Sep 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Pumilio-Homology Domain, Puf Domain, Nanos Response Element, Rna Binding Protein/Rna Complex
(Keyword Search:
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]
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Reference
:
X. Wang, J. Mclachlan, P. D. Zamore, T. M. T. Hall
Modular Recognition Of Rna By A Human Pumilio-Homology Domain
Cell(Cambridge, Mass. ) V. 110 501 2002
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(2, 9)
Info
All PROSITE Patterns/Profiles
1: PUM_HD (A:828-1168)
2: PUM (A:848-883,A:884-919,A:920-955,A:95...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PUM_HD
PS50303
Pumilio homology domain (PUM-HD) profile.
PUM1_HUMAN
828-1168
1
A:828-1168
-
2
PUM
PS50302
Pumilio RNA-binding repeat profile.
PUM1_HUMAN
848-883
884-919
920-955
956-991
992-1027
1028-1063
1064-1099
1103-1142
8
A:848-883
-
A:884-919
-
A:920-955
-
A:956-991
-
A:992-1027
-
A:1028-1063
-
A:1064-1099
-
A:1103-1142
-
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Exons
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1m8xa_ (A:)
1b: SCOP_d1m8xb_ (B:)
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Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
ARM repeat
(317)
Family
:
Pumilio repeat
(19)
Protein domain
:
Pumilio 1
(12)
Human (Homo sapiens) [TaxId: 9606]
(12)
1a
d1m8xa_
A:
1b
d1m8xb_
B:
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CATH Domains
(1, 2)
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all CATH domains
1a: CATH_1m8xA00 (A:828-1168)
1b: CATH_1m8xB00 (B:828-1168)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Leucine-rich Repeat Variant
(77)
Homologous Superfamily
:
Leucine-rich Repeat Variant
(75)
[unclassified]
(11)
1a
1m8xA00
A:828-1168
1b
1m8xB00
B:828-1168
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Pfam Domains
(1, 16)
Info
all PFAM domains
1a: PFAM_PUF_1m8xB01 (B:1110-1141)
1b: PFAM_PUF_1m8xB02 (B:1110-1141)
1c: PFAM_PUF_1m8xB03 (B:1110-1141)
1d: PFAM_PUF_1m8xB04 (B:1110-1141)
1e: PFAM_PUF_1m8xB05 (B:1110-1141)
1f: PFAM_PUF_1m8xB06 (B:1110-1141)
1g: PFAM_PUF_1m8xB07 (B:1110-1141)
1h: PFAM_PUF_1m8xB08 (B:1110-1141)
1i: PFAM_PUF_1m8xB09 (B:1110-1141)
1j: PFAM_PUF_1m8xB10 (B:1110-1141)
1k: PFAM_PUF_1m8xB11 (B:1110-1141)
1l: PFAM_PUF_1m8xB12 (B:1110-1141)
1m: PFAM_PUF_1m8xB13 (B:1110-1141)
1n: PFAM_PUF_1m8xB14 (B:1110-1141)
1o: PFAM_PUF_1m8xB15 (B:1110-1141)
1p: PFAM_PUF_1m8xB16 (B:1110-1141)
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Clan
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TPR
(230)
Family
:
PUF
(24)
Homo sapiens (Human)
(13)
1a
PUF-1m8xB01
B:1110-1141
1b
PUF-1m8xB02
B:1110-1141
1c
PUF-1m8xB03
B:1110-1141
1d
PUF-1m8xB04
B:1110-1141
1e
PUF-1m8xB05
B:1110-1141
1f
PUF-1m8xB06
B:1110-1141
1g
PUF-1m8xB07
B:1110-1141
1h
PUF-1m8xB08
B:1110-1141
1i
PUF-1m8xB09
B:1110-1141
1j
PUF-1m8xB10
B:1110-1141
1k
PUF-1m8xB11
B:1110-1141
1l
PUF-1m8xB12
B:1110-1141
1m
PUF-1m8xB13
B:1110-1141
1n
PUF-1m8xB14
B:1110-1141
1o
PUF-1m8xB15
B:1110-1141
1p
PUF-1m8xB16
B:1110-1141
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Asym.Unit (132 KB)
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Biol.Unit 1 (67 KB)
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