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1M7X
Asym. Unit
Info
Asym.Unit (411 KB)
Biol.Unit 1 (106 KB)
Biol.Unit 2 (108 KB)
Biol.Unit 3 (102 KB)
Biol.Unit 4 (107 KB)
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(1)
Title
:
THE X-RAY CRYSTALLOGRAPHIC STRUCTURE OF BRANCHING ENZYME
Authors
:
M. C. Abad, K. Binderup, J. Rios-Steiner, R. K. Arni, J. Preiss, J. H. Geiger
Date
:
23 Jul 02 (Deposition) - 18 Sep 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Alpha/Beta Barrel, Beta Sandwich, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. C. Abad, K. Binderup, J. Rios-Steiner, R. K. Arni, J. Preiss, J. H. Geiger
The X-Ray Crystallographic Structure Of Escherichia Coli Branching Enzyme
J. Biol. Chem. V. 277 42164 2002
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 12)
Info
All SCOP Domains
1a: SCOP_d1m7xa2 (A:623-728)
1b: SCOP_d1m7xb2 (B:623-728)
1c: SCOP_d1m7xc2 (C:623-728)
1d: SCOP_d1m7xd2 (D:623-728)
2a: SCOP_d1m7xa1 (A:117-226)
2b: SCOP_d1m7xb1 (B:117-226)
2c: SCOP_d1m7xc1 (C:118-226)
2d: SCOP_d1m7xd1 (D:117-226)
3a: SCOP_d1m7xa3 (A:227-622)
3b: SCOP_d1m7xb3 (B:227-622)
3c: SCOP_d1m7xc3 (C:227-622)
3d: SCOP_d1m7xd3 (D:227-622)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Glycosyl hydrolase domain
(397)
Superfamily
:
Glycosyl hydrolase domain
(397)
Family
:
alpha-Amylases, C-terminal beta-sheet domain
(272)
Protein domain
:
1,4-alpha-glucan branching enzyme
(1)
Escherichia coli [TaxId: 562]
(1)
1a
d1m7xa2
A:623-728
1b
d1m7xb2
B:623-728
1c
d1m7xc2
C:623-728
1d
d1m7xd2
D:623-728
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
E-set domains of sugar-utilizing enzymes
(147)
Protein domain
:
1,4-alpha-glucan branching enzyme, N-terminal domain N
(1)
Escherichia coli [TaxId: 562]
(1)
2a
d1m7xa1
A:117-226
2b
d1m7xb1
B:117-226
2c
d1m7xc1
C:118-226
2d
d1m7xd1
D:117-226
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
Amylase, catalytic domain
(385)
Protein domain
:
1,4-alpha-glucan branching enzyme, central domain
(1)
Escherichia coli [TaxId: 562]
(1)
3a
d1m7xa3
A:227-622
3b
d1m7xb3
B:227-622
3c
d1m7xc3
C:227-622
3d
d1m7xd3
D:227-622
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CATH Domains
(3, 12)
Info
all CATH domains
1a: CATH_1m7xD02 (D:230-612)
1b: CATH_1m7xA02 (A:230-612)
1c: CATH_1m7xB02 (B:230-612)
1d: CATH_1m7xC02 (C:230-612)
2a: CATH_1m7xA03 (A:623-728)
2b: CATH_1m7xB03 (B:623-728)
2c: CATH_1m7xC03 (C:623-728)
2d: CATH_1m7xD03 (D:623-728)
3a: CATH_1m7xB01 (B:117-223)
3b: CATH_1m7xD01 (D:117-223)
3c: CATH_1m7xA01 (A:117-223)
3d: CATH_1m7xC01 (C:118-223)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Escherichia coli. Organism_taxid: 562.
(2)
1a
1m7xD02
D:230-612
1b
1m7xA02
A:230-612
1c
1m7xB02
B:230-612
1d
1m7xC02
C:230-612
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Golgi alpha-mannosidase II
(346)
Escherichia coli. Organism_taxid: 562.
(1)
2a
1m7xA03
A:623-728
2b
1m7xB03
B:623-728
2c
1m7xC03
C:623-728
2d
1m7xD03
D:623-728
Homologous Superfamily
:
Immunoglobulins
(2282)
Escherichia coli. Organism_taxid: 562.
(10)
3a
1m7xB01
B:117-223
3b
1m7xD01
D:117-223
3c
1m7xA01
A:117-223
3d
1m7xC01
C:118-223
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Pfam Domains
(3, 12)
Info
all PFAM domains
1a: PFAM_Alpha_amylase_C_1m7xD01 (D:628-728)
1b: PFAM_Alpha_amylase_C_1m7xD02 (D:628-728)
1c: PFAM_Alpha_amylase_C_1m7xD03 (D:628-728)
1d: PFAM_Alpha_amylase_C_1m7xD04 (D:628-728)
2a: PFAM_CBM_48_1m7xD05 (D:124-207)
2b: PFAM_CBM_48_1m7xD06 (D:124-207)
2c: PFAM_CBM_48_1m7xD07 (D:124-207)
2d: PFAM_CBM_48_1m7xD08 (D:124-207)
3a: PFAM_Alpha_amylase_1m7xD09 (D:267-371)
3b: PFAM_Alpha_amylase_1m7xD10 (D:267-371)
3c: PFAM_Alpha_amylase_1m7xD11 (D:267-371)
3d: PFAM_Alpha_amylase_1m7xD12 (D:267-371)
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Clans
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Organisms
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)
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)
Clan
:
GHD
(106)
Family
:
Alpha-amylase_C
(82)
Escherichia coli (strain K12)
(1)
1a
Alpha-amylase_C-1m7xD01
D:628-728
1b
Alpha-amylase_C-1m7xD02
D:628-728
1c
Alpha-amylase_C-1m7xD03
D:628-728
1d
Alpha-amylase_C-1m7xD04
D:628-728
Family
:
CBM_48
(8)
Escherichia coli (strain K12)
(2)
2a
CBM_48-1m7xD05
D:124-207
2b
CBM_48-1m7xD06
D:124-207
2c
CBM_48-1m7xD07
D:124-207
2d
CBM_48-1m7xD08
D:124-207
Clan
:
Glyco_hydro_tim
(488)
Family
:
Alpha-amylase
(138)
Escherichia coli (strain K12)
(2)
3a
Alpha-amylase-1m7xD09
D:267-371
3b
Alpha-amylase-1m7xD10
D:267-371
3c
Alpha-amylase-1m7xD11
D:267-371
3d
Alpha-amylase-1m7xD12
D:267-371
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Show PDB file:
Asym.Unit (411 KB)
Header - Asym.Unit
Biol.Unit 1 (106 KB)
Header - Biol.Unit 1
Biol.Unit 2 (108 KB)
Header - Biol.Unit 2
Biol.Unit 3 (102 KB)
Header - Biol.Unit 3
Biol.Unit 4 (107 KB)
Header - Biol.Unit 4
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