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1M6Z
Biol. Unit 4
Info
Asym.Unit (281 KB)
Biol.Unit 1 (72 KB)
Biol.Unit 2 (70 KB)
Biol.Unit 3 (73 KB)
Biol.Unit 4 (72 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF REDUCED RECOMBINANT CYTOCHROME C4 FROM PSEUDOMONAS STUTZERI
Authors
:
A. Noergaard, P. Harris, S. Larsen, H. E. M. Christensen
Date
:
18 Jul 02 (Deposition) - 16 Sep 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.35
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Electron Transport, Diheme Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Noergaard, P. Harris, S. Larsen, H. E. M. Christensen
Structural Comparison Of Recombinant Pseudomonas Stutzeri Cytochrome C4 In Two Oxidation States
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
2a: HEME C (HECa)
2b: HEME C (HECb)
2c: HEME C (HECc)
2d: HEME C (HECd)
2e: HEME C (HECe)
2f: HEME C (HECf)
2g: HEME C (HECg)
2h: HEME C (HECh)
3a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
-1
Ligand/Ion
GLYCEROL
2
HEC
2
Ligand/Ion
HEME C
3
TRS
1
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
[
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Sites
(4, 4)
Info
All Sites
1: AC4 (SOFTWARE)
2: AC7 (SOFTWARE)
3: AC8 (SOFTWARE)
4: AC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC4
SOFTWARE
TYR B:39 , LYS B:42 , GLN B:43 , PRO B:117 , ALA B:118 , CYS B:119 , CYS B:122 , HIS B:123 , PHE B:135 , PRO B:136 , LEU B:138 , TYR B:145 , GLN B:149 , ARG B:158 , ASN B:160 , ILE B:166 , MET B:167 , VAL B:170 , HEC B:199 , HOH B:202 , HOH B:281 , ALA D:16
BINDING SITE FOR RESIDUE HEC B 200
2
AC7
SOFTWARE
PHE B:135 , VAL D:13 , CYS D:14 , CYS D:17 , HIS D:18 , PHE D:29 , PRO D:30 , LEU D:32 , TYR D:39 , GLN D:43 , LEU D:44 , ILE D:47 , ARG D:61 , VAL D:63 , GLU D:65 , MET D:66 , MET D:69 , LEU D:70 , ILE D:81 , TYR D:145 , LYS D:148 , GLN D:149 , HEC D:200 , HOH D:202 , HOH D:226 , HOH D:333
BINDING SITE FOR RESIDUE HEC D 199
3
AC8
SOFTWARE
ALA A:16 , TYR D:39 , LYS D:42 , GLN D:43 , CYS D:119 , CYS D:122 , HIS D:123 , PHE D:135 , PRO D:136 , LEU D:138 , TYR D:145 , GLN D:149 , ARG D:158 , ASN D:160 , ILE D:166 , MET D:167 , VAL D:170 , HEC D:199 , HOH D:203 , HOH D:217 , HOH D:220
BINDING SITE FOR RESIDUE HEC D 200
4
AC9
SOFTWARE
LYS D:31 , LEU D:32 , ALA D:33 , GLN D:35 , GLY D:90 , LYS D:137 , LEU D:138 , GLY D:139 , GLN D:141 , HOH D:295
BINDING SITE FOR RESIDUE TRS D 201
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: CYTC (D:98-190)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTC
PS51007
Cytochrome c family profile.
CYC4_PSEST
22-109
118-210
2
-
-
-
D:2-89
-
-
-
D:98-190
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1m6za1 (A:1-92)
1b: SCOP_d1m6zb1 (B:1-92)
1c: SCOP_d1m6zb2 (B:93-190)
1d: SCOP_d1m6zc1 (C:1-92)
1e: SCOP_d1m6zc2 (C:93-190)
1f: SCOP_d1m6zd1 (D:1-92)
1g: SCOP_d1m6zd2 (D:93-190)
1h: SCOP_d1m6za2 (A:93-190)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Cytochrome c
(308)
Superfamily
:
Cytochrome c
(308)
Family
:
Two-domain cytochrome c
(6)
Protein domain
:
Cytochrome c4
(4)
Pseudomonas stutzeri [TaxId: 316]
(3)
1a
d1m6za1
A:1-92
1b
d1m6zb1
B:1-92
1c
d1m6zb2
B:93-190
1d
d1m6zc1
C:1-92
1e
d1m6zc2
C:93-190
1f
d1m6zd1
D:1-92
1g
d1m6zd2
D:93-190
1h
d1m6za2
A:93-190
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1m6zA02 (A:92-190)
1b: CATH_1m6zA01 (A:1-91)
1c: CATH_1m6zB01 (B:1-91)
1d: CATH_1m6zC01 (C:1-91)
1e: CATH_1m6zD01 (D:1-91)
1f: CATH_1m6zB02 (B:92-190)
1g: CATH_1m6zC02 (C:92-190)
1h: CATH_1m6zD02 (D:92-190)
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Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cytochrome Bc1 Complex; Chain D, domain 2
(279)
Homologous Superfamily
:
Cytochrome c
(279)
Pseudomonas stutzeri. Organism_taxid: 316.
(2)
1a
1m6zA02
A:92-190
1b
1m6zA01
A:1-91
1c
1m6zB01
B:1-91
1d
1m6zC01
C:1-91
1e
1m6zD01
D:1-91
1f
1m6zB02
B:92-190
1g
1m6zC02
C:92-190
1h
1m6zD02
D:92-190
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Cytochrom_C_1m6zD01 (D:100-190)
1b: PFAM_Cytochrom_C_1m6zD02 (D:100-190)
1c: PFAM_Cytochrom_C_1m6zD03 (D:100-190)
1d: PFAM_Cytochrom_C_1m6zD04 (D:100-190)
1e: PFAM_Cytochrom_C_1m6zD05 (D:100-190)
1f: PFAM_Cytochrom_C_1m6zD06 (D:100-190)
1g: PFAM_Cytochrom_C_1m6zD07 (D:100-190)
1h: PFAM_Cytochrom_C_1m6zD08 (D:100-190)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Cytochrome-c
(108)
Family
:
Cytochrom_C
(54)
Pseudomonas stutzeri (Pseudomonas perfectomarina)
(2)
1a
Cytochrom_C-1m6zD01
D:100-190
1b
Cytochrom_C-1m6zD02
D:100-190
1c
Cytochrom_C-1m6zD03
D:100-190
1d
Cytochrom_C-1m6zD04
D:100-190
1e
Cytochrom_C-1m6zD05
D:100-190
1f
Cytochrom_C-1m6zD06
D:100-190
1g
Cytochrom_C-1m6zD07
D:100-190
1h
Cytochrom_C-1m6zD08
D:100-190
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Chain D
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (281 KB)
Header - Asym.Unit
Biol.Unit 1 (72 KB)
Header - Biol.Unit 1
Biol.Unit 2 (70 KB)
Header - Biol.Unit 2
Biol.Unit 3 (73 KB)
Header - Biol.Unit 3
Biol.Unit 4 (72 KB)
Header - Biol.Unit 4
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