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Getting 'Exon' information from database.
1M6H
Asym. Unit
Info
Asym.Unit (136 KB)
Biol.Unit 1 (131 KB)
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(1)
Title
:
HUMAN GLUTATHIONE-DEPENDENT FORMALDEHYDE DEHYDROGENASE
Authors
:
P. C. Sanghani, H. Robinson, W. F. Bosron, T. D. Hurley
Date
:
16 Jul 02 (Deposition) - 26 Jul 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Glutathione-Dependent Formaldehyde Dehydrogenase Class Iii Alcohol Dehydrogenase, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. C. Sanghani, H. Robinson, W. F. Bosron, T. D. Hurley
Human Glutathione-Dependent Formaldehyde Dehydrogenase. Structures Of Apo, Binary, And Inhibitory Ternary Complexes.
Biochemistry V. 41 10778 2002
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 11)
Info
All Hetero Components
1a: POTASSIUM ION (Ka)
1b: POTASSIUM ION (Kb)
2a: PHOSPHATE ION (PO4a)
2b: PHOSPHATE ION (PO4b)
2c: PHOSPHATE ION (PO4c)
2d: PHOSPHATE ION (PO4d)
2e: PHOSPHATE ION (PO4e)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
K
2
Ligand/Ion
POTASSIUM ION
2
PO4
5
Ligand/Ion
PHOSPHATE ION
3
ZN
4
Ligand/Ion
ZINC ION
[
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]
Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:96 , CYS A:99 , CYS A:102 , CYS A:110
BINDING SITE FOR RESIDUE ZN A 1375
02
AC2
SOFTWARE
CYS A:44 , HIS A:66 , CYS A:173 , HOH A:3010
BINDING SITE FOR RESIDUE ZN A 1376
03
AC3
SOFTWARE
CYS B:96 , CYS B:99 , CYS B:102 , CYS B:110
BINDING SITE FOR RESIDUE ZN B 1375
04
AC4
SOFTWARE
CYS B:44 , HIS B:66 , CYS B:173 , HOH B:3254
BINDING SITE FOR RESIDUE ZN B 1376
05
AC5
SOFTWARE
ALA A:186 , LYS A:187 , GLU A:189 , TYR A:263 , HOH A:3090 , HOH A:3169 , HOH A:3246 , HOH A:3331
BINDING SITE FOR RESIDUE K A 2001
06
AC6
SOFTWARE
HOH A:3354 , ALA B:186 , LYS B:187 , GLU B:189 , TYR B:263 , HOH B:3279 , HOH B:3315
BINDING SITE FOR RESIDUE K B 2002
07
AC7
SOFTWARE
LYS A:314 , HOH A:3239 , HOH A:3325 , HOH A:3400 , LYS B:314
BINDING SITE FOR RESIDUE PO4 A 3001
08
AC8
SOFTWARE
PO4 A:3003 , LYS B:83 , LYS B:158 , HOH B:3188 , HOH B:3266
BINDING SITE FOR RESIDUE PO4 B 3002
09
AC9
SOFTWARE
LYS A:83 , ASP A:86 , LYS A:158 , HOH A:3086 , LYS B:83 , PO4 B:3002 , HOH B:3250 , HOH B:3416
BINDING SITE FOR RESIDUE PO4 A 3003
10
BC1
SOFTWARE
HIS A:45 , GLY A:201 , VAL A:202 , ARG A:368 , HOH A:3186 , HOH A:3194 , HOH A:3382
BINDING SITE FOR RESIDUE PO4 A 3004
11
BC2
SOFTWARE
HIS B:45 , GLY B:201 , VAL B:202 , ARG B:368 , HOH B:3110 , HOH B:3154 , HOH B:3236 , HOH B:3404
BINDING SITE FOR RESIDUE PO4 B 3005
[
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]
SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_025823 (L162S, chain A/B, )
2: VAR_025824 (V308I, chain A/B, )
3: VAR_048199 (D352E, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_025823
L
163
S
ADHX_HUMAN
Polymorphism
28730623
A/B
L
162
S
2
UniProt
VAR_025824
V
309
I
ADHX_HUMAN
Polymorphism
28730628
A/B
V
308
I
3
UniProt
VAR_048199
D
353
E
ADHX_HUMAN
Polymorphism
16996593
A/B
D
352
E
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ADH_ZINC (A:65-79,B:65-79)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADH_ZINC
PS00059
Zinc-containing alcohol dehydrogenases signature.
ADHX_HUMAN
66-80
2
A:65-79
B:65-79
[
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]
Exons
(9, 18)
Info
All Exons
Exon 1.1c (A:114-187 | B:114-187)
Exon 1.2c (A:188-274 | B:188-274)
Exon 1.3a (A:275-320 | B:275-320)
Exon 1.4a (A:320-366 | B:320-366)
Exon 1.4c (A:366-373 | B:366-373)
Exon 1.5b (A:1-3 | B:1-3)
Exon 1.7 (A:4-37 | B:4-37)
Exon 1.8b (A:38-85 | B:38-85)
Exon 1.9a (A:85-114 | B:85-114)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1c
02: Boundary 1.1c/1.2c
03: Boundary 1.2c/1.3a
04: Boundary 1.3a/1.4a
05: Boundary 1.4a/1.4c
06: Boundary 1.4c/1.5b
07: Boundary 1.5b/1.7
08: Boundary 1.7/1.8b
09: Boundary 1.8b/1.9a
10: Boundary 1.9a/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000296412
1c
ENSE00001080657
chr4:
99998074-99997855
220
ADHX_HUMAN
115-188
74
2
A:114-187
B:114-187
74
74
1.2c
ENST00000296412
2c
ENSE00002174161
chr4:
99997703-99997443
261
ADHX_HUMAN
189-275
87
2
A:188-274
B:188-274
87
87
1.3a
ENST00000296412
3a
ENSE00001309047
chr4:
99996200-99996065
136
ADHX_HUMAN
276-321
46
2
A:275-320
B:275-320
46
46
1.4a
ENST00000296412
4a
ENSE00001134769
chr4:
99993862-99993724
139
ADHX_HUMAN
321-367
47
2
A:320-366
B:320-366
47
47
1.4c
ENST00000296412
4c
ENSE00001080651
chr4:
99993592-99992132
1461
ADHX_HUMAN
367-374
8
2
A:366-373
B:366-373
8
8
1.5b
ENST00000296412
5b
ENSE00002019192
chr4:
100009902-100009840
63
ADHX_HUMAN
1-4
4
2
A:1-3
B:1-3
3
3
1.7
ENST00000296412
7
ENSE00001670857
chr4:
100006367-100006266
102
ADHX_HUMAN
5-38
34
2
A:4-37
B:4-37
34
34
1.8b
ENST00000296412
8b
ENSE00001134723
chr4:
100003267-100003126
142
ADHX_HUMAN
39-86
48
2
A:38-85
B:38-85
48
48
1.9a
ENST00000296412
9a
ENSE00001080654
chr4:
100002603-100002516
88
ADHX_HUMAN
86-115
30
2
A:85-114
B:85-114
30
30
[
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]
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1m6ha1 (A:1-162,A:339-373)
1b: SCOP_d1m6hb1 (B:1-162,B:339-373)
2a: SCOP_d1m6ha2 (A:163-338)
2b: SCOP_d1m6hb2 (B:163-338)
View:
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
GroES-like
(132)
Superfamily
:
GroES-like
(130)
Family
:
Alcohol dehydrogenase-like, N-terminal domain
(114)
Protein domain
:
Alcohol dehydrogenase
(77)
Human (Homo sapiens), different isozymes [TaxId: 9606]
(24)
1a
d1m6ha1
A:1-162,A:339-373
1b
d1m6hb1
B:1-162,B:339-373
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Alcohol dehydrogenase-like, C-terminal domain
(115)
Protein domain
:
Alcohol dehydrogenase
(77)
Human (Homo sapiens), different isozymes [TaxId: 9606]
(24)
2a
d1m6ha2
A:163-338
2b
d1m6hb2
B:163-338
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1m6hA02 (A:178-316)
1b: CATH_1m6hB02 (B:178-316)
2a: CATH_1m6hA01 (A:1-177,A:317-373)
2b: CATH_1m6hB01 (B:1-177,B:317-373)
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(
)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Human (Homo sapiens)
(188)
1a
1m6hA02
A:178-316
1b
1m6hB02
B:178-316
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Quinone Oxidoreductase; Chain A, domain 1
(131)
Homologous Superfamily
:
Medium-chain alcohol dehydrogenases, catalytic domain
(131)
Human (Homo sapiens)
(30)
2a
1m6hA01
A:1-177,A:317-373
2b
1m6hB01
B:1-177,B:317-373
[
close CATH info
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_ADH_N_1m6hB01 (B:31-159)
1b: PFAM_ADH_N_1m6hB02 (B:31-159)
2a: PFAM_ADH_zinc_N_1m6hB03 (B:201-335)
2b: PFAM_ADH_zinc_N_1m6hB04 (B:201-335)
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Clans
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)
Families
(
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(
)
Organisms
(
)
(
)
Clan
:
GroES
(70)
Family
:
ADH_N
(62)
Homo sapiens (Human)
(18)
1a
ADH_N-1m6hB01
B:31-159
1b
ADH_N-1m6hB02
B:31-159
Clan
:
NADP_Rossmann
(1239)
Family
:
ADH_zinc_N
(75)
Homo sapiens (Human)
(24)
2a
ADH_zinc_N-1m6hB03
B:201-335
2b
ADH_zinc_N-1m6hB04
B:201-335
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Asym.Unit (136 KB)
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