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1M68
Biol. Unit 1
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Asym.Unit (47 KB)
Biol.Unit 1 (122 KB)
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(1)
Title
:
YCDX PROTEIN, TRINUCLEAR ZINC SITE
Authors
:
A. Teplyakov, G. Obmolova, P. P. Khil, R. D. Camerini-Otero, G. L. Gilli
Date
:
14 Jul 02 (Deposition) - 22 Apr 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A
Biol. Unit 1: A (3x)
Keywords
:
Structural Genomics, Beta-Alpha-Barrel, Trinuclear Zinc, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Teplyakov, G. Obmolova, P. P. Khil, A. J. Howard, R. D. Camerini-Otero, G. L. Gilliland
Crystal Structure Of The Escherichia Coli Ycdx Protein Reveals A Trinuclear Zinc Active Site
Proteins: V. 51 315 2003 Struct. , Funct. , Genet.
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
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No.
Name
Count
Type
Full Name
1
SO4
6
Ligand/Ion
SULFATE ION
2
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:15 , HIS A:40 , HIS A:194 , HOH A:322
BINDING SITE FOR RESIDUE ZN A 301
2
AC2
SOFTWARE
HIS A:7 , HIS A:9 , GLU A:73 , ASP A:192 , ZN A:303 , HOH A:441
BINDING SITE FOR RESIDUE ZN A 302
3
AC3
SOFTWARE
GLU A:73 , HIS A:101 , HIS A:131 , ZN A:302 , HOH A:441
BINDING SITE FOR RESIDUE ZN A 303
4
AC4
SOFTWARE
ARG A:57
BINDING SITE FOR RESIDUE SO4 A 304
5
AC5
SOFTWARE
TYR A:2 , PHE A:214
BINDING SITE FOR RESIDUE SO4 A 305
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1m68a_ (A:)
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Protein Domains
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Organisms
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
7-stranded beta/alpha barrel
(137)
Superfamily
:
PHP domain-like
(6)
Family
:
PHP domain
(4)
Protein domain
:
Hypothetical protein YcdX
(3)
Escherichia coli [TaxId: 562]
(3)
1a
d1m68a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1m68A00 (A:2-245)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Metal-dependent hydrolases
(190)
Escherichia coli. Organism_taxid: 562.
(6)
1a
1m68A00
A:2-245
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Pfam Domains
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all PFAM domains
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Chain A
Asymmetric Unit 1
Asymmetric Unit 2
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Asym.Unit (47 KB)
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