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1M67
Biol. Unit 1
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Asym.Unit (61 KB)
Biol.Unit 1 (110 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF LEISHMANIA MEXICANA GPDH COMPLEXED WITH INHIBITOR 2-BROMO-6-HYDROXY-PURINE
Authors
:
J. Choe, S. Suresh, G. Wisedchaisri, K. J. Kennedy, M. H. Gelb, W. G. J. Ho
Date
:
12 Jul 02 (Deposition) - 11 Dec 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Nad-Binding Motif, Oxidoreductase
(Keyword Search:
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Reference
:
J. Choe, S. Suresh, G. Wisedchaisri, K. J. Kennedy, M. H. Gelb, W. G. J. Hol
Anomalous Differences Of Light Elements In Determining Precise Binding Modes Of Ligands To Glycerol-3-Phosphate Dehydrogenase
Chem. Biol. V. 9 1189 2002
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: 2-BROMO-6-HYDROXY-PURINE (BOAa)
2a: PALMITIC ACID (PLMa)
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No.
Name
Count
Type
Full Name
1
BOA
2
Ligand/Ion
2-BROMO-6-HYDROXY-PURINE
2
PLM
2
Ligand/Ion
PALMITIC ACID
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:97
BINDING SITE FOR RESIDUE BOA A 402
2
AC2
SOFTWARE
PHE A:165 , VAL A:219 , ALA A:220 , MET A:225 , ALA A:229 , GLN A:324 , ILE A:325 , ILE A:328 , LEU A:342 , HOH A:537
BINDING SITE FOR RESIDUE PLM A 401
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: NAD_G3PDH (A:207-228)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NAD_G3PDH
PS00957
NAD-dependent glycerol-3-phosphate dehydrogenase signature.
GPDA_LEIME
207-228
2
A:207-228
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Exons
(0, 0)
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1m67a1 (A:198-357)
2a: SCOP_d1m67a2 (A:9-197)
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Protein Domains
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Organisms
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(
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Class
:
All alpha proteins
(14657)
Fold
:
6-phosphogluconate dehydrogenase C-terminal domain-like
(119)
Superfamily
:
6-phosphogluconate dehydrogenase C-terminal domain-like
(119)
Family
:
Glycerol-3-phosphate dehydrogenase
(8)
Protein domain
:
Glycerol-3-phosphate dehydrogenase
(8)
Trypanosome (Leishmania mexicana) [TaxId: 5665]
(7)
1a
d1m67a1
A:198-357
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
6-phosphogluconate dehydrogenase-like, N-terminal domain
(69)
Protein domain
:
Glycerol-3- phosphate dehydrogenase
(8)
Trypanosome (Leishmania mexicana) [TaxId: 5665]
(7)
2a
d1m67a2
A:9-197
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1m67A01 (A:9-206)
2a: CATH_1m67A02 (A:208-356)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Leishmania mexicana. Organism_taxid: 5665.
(8)
1a
1m67A01
A:9-206
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2
(60)
Homologous Superfamily
:
N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2
(59)
Leishmania mexicana. Organism_taxid: 5665.
(6)
2a
1m67A02
A:208-356
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_NAD_Gly3P_dh_C_1m67A01 (A:198-342)
2a: PFAM_NAD_Gly3P_dh_N_1m67A02 (A:17-178)
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Clan
:
6PGD_C
(47)
Family
:
NAD_Gly3P_dh_C
(11)
Leishmania mexicana
(4)
1a
NAD_Gly3P_dh_C-1m67A01
A:198-342
Clan
:
NADP_Rossmann
(1239)
Family
:
NAD_Gly3P_dh_N
(11)
Leishmania mexicana
(4)
2a
NAD_Gly3P_dh_N-1m67A02
A:17-178
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