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1M64
Biol. Unit 1
Info
Asym.Unit (228 KB)
Biol.Unit 1 (112 KB)
Biol.Unit 2 (113 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF Q363F MUTANT FLAVOCYTOCHROME C3
Authors
:
C. G. Mowat, K. L. Pankhurst, C. S. Miles, D. Leys, M. D. Walkinshaw, G. A. Reid, S. K. Chapman
Date
:
12 Jul 02 (Deposition) - 06 Nov 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Flavocytochrome, Electron Transport, Fad, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. G. Mowat, K. L. Pankhurst, C. S. Miles, D. Leys, M. D. Walkinshaw, G. A. Reid, S. K. Chapman
Engineering Water To Act As An Active Site Acid Catalyst In A Soluble Fumarate Reductase
Biochemistry V. 41 11990 2002
(for further references see the
PDB file header
)
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
2a: FUMARIC ACID (FUMa)
2b: FUMARIC ACID (FUMb)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
3d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
3e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
3f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
3g: PROTOPORPHYRIN IX CONTAINING FE (HEMg)
3h: PROTOPORPHYRIN IX CONTAINING FE (HEMh)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
FAD
1
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
FUM
1
Ligand/Ion
FUMARIC ACID
3
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
NA
-1
Ligand/Ion
SODIUM ION
[
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC3 (SOFTWARE)
3: AC4 (SOFTWARE)
4: AC5 (SOFTWARE)
5: AC6 (SOFTWARE)
6: AC7 (SOFTWARE)
7: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:506 , MET A:507 , GLY A:508 , GLU A:534 , THR A:536 , HOH A:3009
BINDING SITE FOR RESIDUE NA A 3002
2
AC3
SOFTWARE
CYS A:14 , CYS A:17 , HIS A:18 , SER A:73 , ALA A:74 , HIS A:75 , HOH A:3142 , HOH A:3235 , HOH A:3276 , HOH A:3343 , HOH A:3834 , HOH A:3905 , HOH A:3970 , HOH A:4063
BINDING SITE FOR RESIDUE HEM A 801
3
AC4
SOFTWARE
LEU A:4 , PHE A:7 , HIS A:8 , GLN A:12 , SER A:16 , GLN A:35 , CYS A:36 , CYS A:39 , HIS A:40 , HIS A:72 , TYR A:94 , HEM A:803 , HOH A:3102 , HOH A:3362 , HOH A:3564 , HOH A:3684 , HOH A:3903 , HOH A:3913
BINDING SITE FOR RESIDUE HEM A 802
4
AC5
SOFTWARE
HIS A:40 , LEU A:43 , VAL A:46 , HIS A:52 , ALA A:57 , HIS A:58 , ALA A:67 , CYS A:68 , CYS A:71 , HIS A:72 , PHE A:90 , ASN A:91 , MET A:92 , HEM A:802 , HOH A:3025 , HOH A:3359 , HOH A:3398 , HOH A:3728
BINDING SITE FOR RESIDUE HEM A 803
5
AC6
SOFTWARE
HIS A:54 , ASN A:56 , SER A:60 , HIS A:61 , PHE A:62 , CYS A:82 , SER A:84 , CYS A:85 , HIS A:86 , PHE A:88 , LEU A:167 , VAL A:374 , LYS A:431 , LYS A:434 , HOH A:3064 , HOH A:3079 , HOH A:3085 , HOH A:3113 , HOH A:3118 , HOH A:3149 , HOH A:3508 , HOH A:3520
BINDING SITE FOR RESIDUE HEM A 804
6
AC7
SOFTWARE
VAL A:132 , GLY A:133 , GLY A:135 , GLY A:136 , ALA A:137 , GLU A:156 , LYS A:157 , GLU A:158 , GLY A:162 , GLY A:163 , ASN A:164 , ALA A:165 , LEU A:167 , ALA A:168 , ALA A:169 , GLY A:170 , GLY A:171 , ARG A:277 , GLY A:278 , ALA A:312 , THR A:313 , GLY A:314 , THR A:336 , ASN A:337 , GLN A:338 , ASP A:344 , MET A:375 , HIS A:504 , HIS A:505 , GLY A:533 , GLU A:534 , GLY A:547 , ASN A:548 , ALA A:549 , ILE A:550 , ILE A:553 , FUM A:3001 , HOH A:3010 , HOH A:3011 , HOH A:3017 , HOH A:3022 , HOH A:3050
BINDING SITE FOR RESIDUE FAD A 3000
7
AC8
SOFTWARE
GLY A:170 , HIS A:365 , MET A:375 , THR A:377 , GLU A:378 , HIS A:504 , ARG A:544 , GLY A:546 , GLY A:547 , FAD A:3000 , HOH A:3066 , HOH A:3130 , HOH A:3290
BINDING SITE FOR RESIDUE FUM A 3001
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: MULTIHEME_CYTC (A:9-91)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MULTIHEME_CYTC
PS51008
Multiheme cytochrome c family profile.
FRDA_SHEFR
9-91
1
A:9-91
-
FRDA_SHEFN
34-116
1
A:9-91
-
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1m64a1 (A:1-102)
1b: SCOP_d1m64b1 (B:1-102)
2a: SCOP_d1m64a3 (A:360-505)
2b: SCOP_d1m64b3 (B:360-505)
3a: SCOP_d1m64a2 (A:103-359,A:506-568)
3b: SCOP_d1m64b2 (B:103-359,B:506-568)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Multiheme cytochromes
(149)
Superfamily
:
Multiheme cytochromes
(149)
Family
:
Di-heme elbow motif
(53)
Protein domain
:
Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
(22)
Shewanella frigidimarina [TaxId: 56812]
(16)
1a
d1m64a1
A:1-102
1b
d1m64b1
B:1-102
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
(45)
Superfamily
:
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
(45)
Family
:
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
(45)
Protein domain
:
Flavocytochrome c3 (respiratory fumarate reductase)
(19)
Shewanella frigidimarina [TaxId: 56812]
(16)
2a
d1m64a3
A:360-505
2b
d1m64b3
B:360-505
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
FAD/NAD(P)-binding domain
(331)
Superfamily
:
FAD/NAD(P)-binding domain
(331)
Family
:
Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
(45)
Protein domain
:
Flavocytochrome c3 (respiratory fumarate reductase)
(19)
Shewanella frigidimarina [TaxId: 56812]
(16)
3a
d1m64a2
A:103-359,A:506-568
3b
d1m64b2
B:103-359,B:506-568
[
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1m64A03 (A:103-359,A:506-568)
1b: CATH_1m64B03 (B:103-359,B:506-568)
2a: CATH_1m64A01 (A:365-502)
2b: CATH_1m64B01 (B:365-502)
3a: CATH_1m64A02 (A:1-99)
3b: CATH_1m64B02 (B:1-99)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
FAD/NAD(P)-binding domain
(373)
Homologous Superfamily
:
[code=3.50.50.60, no name defined]
(373)
Shewanella frigidimarina. Organism_taxid: 56812.
(13)
1a
1m64A03
A:103-359,A:506-568
1b
1m64B03
B:103-359,B:506-568
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Flavocytochrome C3; Chain A, domain 1
(40)
Homologous Superfamily
:
Flavocytochrome C3; Chain A, domain 1
(40)
Shewanella frigidimarina. Organism_taxid: 56812.
(13)
2a
1m64A01
A:365-502
2b
1m64B01
B:365-502
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Flavocytochrome C3; Chain A, domain 2
(23)
Homologous Superfamily
:
Flavocytochrome C3; Chain A
(23)
Shewanella frigidimarina. Organism_taxid: 56812.
(13)
3a
1m64A02
A:1-99
3b
1m64B02
B:1-99
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_FAD_binding_2_1m64B01 (B:128-550)
1b: PFAM_FAD_binding_2_1m64B02 (B:128-550)
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Organisms
(
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(
)
Clan
:
NADP_Rossmann
(1239)
Family
:
FAD_binding_2
(21)
Shewanella frigidimarina
(9)
1a
FAD_binding_2-1m64B01
B:128-550
1b
FAD_binding_2-1m64B02
B:128-550
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Asym.Unit (228 KB)
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