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1M63
Biol. Unit 1
Info
Asym.Unit (236 KB)
Biol.Unit 1 (226 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CALCINEURIN-CYCLOPHILIN-CYCLOSPORIN SHOWS COMMON BUT DISTINCT RECOGNITION OF IMMUNOPHILIN-DRUG COMPLEXES
Authors
:
Q. Huai, H. -Y. Kim, Y. Liu, Y. Zhao, A. Mondragon, J. O. Liu, H. Ke
Date
:
12 Jul 02 (Deposition) - 25 Sep 02 (Release) - 27 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E,F,G,H (1x)
Keywords
:
Hydrolase-Isomerase-Immunosuppressant Complex, Immunophilin, Calcineurin, Cyclosporin A, Immunosuppressant, Cyclophilin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Q. Huai, H. -Y. Kim, Y. Liu, Y. Zhao, A. Mondragon, J. O. Liu, H. Ke
Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin Shows Common But Distinct Recognition Of Immunophilin-Drug Complexes
Proc. Natl. Acad. Sci. Usa V. 99 12037 2002
[
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Hetero Components
(6, 18)
Info
All Hetero Components
1a: ALPHA-AMINOBUTYRIC ACID (ABAa)
1b: ALPHA-AMINOBUTYRIC ACID (ABAb)
2a: 4-METHYL-4-[(E)-2-BUTENYL]-4,N-MET... (BMTa)
2b: 4-METHYL-4-[(E)-2-BUTENYL]-4,N-MET... (BMTb)
3a: CALCIUM ION (CAa)
3b: CALCIUM ION (CAb)
3c: CALCIUM ION (CAc)
3d: CALCIUM ION (CAd)
3e: CALCIUM ION (CAe)
3f: CALCIUM ION (CAf)
3g: CALCIUM ION (CAg)
3h: CALCIUM ION (CAh)
4a: D-ALANINE (DALa)
4b: D-ALANINE (DALb)
5a: FE (III) ION (FEa)
5b: FE (III) ION (FEb)
6a: N-METHYLLEUCINE (MLEa)
6b: N-METHYLLEUCINE (MLEb)
6c: N-METHYLLEUCINE (MLEc)
6d: N-METHYLLEUCINE (MLEd)
6e: N-METHYLLEUCINE (MLEe)
6f: N-METHYLLEUCINE (MLEf)
6g: N-METHYLLEUCINE (MLEg)
6h: N-METHYLLEUCINE (MLEh)
7a: N-METHYLVALINE (MVAa)
7b: N-METHYLVALINE (MVAb)
8a: SARCOSINE (SARa)
8b: SARCOSINE (SARb)
9a: ZINC ION (ZNa)
9b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ABA
2
Mod. Amino Acid
ALPHA-AMINOBUTYRIC ACID
2
BMT
2
Mod. Amino Acid
4-METHYL-4-[(E)-2-BUTENYL]-4,N-METHYL-THREONINE
3
CA
-1
Ligand/Ion
CALCIUM ION
4
DAL
2
Mod. Amino Acid
D-ALANINE
5
FE
-1
Ligand/Ion
FE (III) ION
6
MLE
8
Mod. Amino Acid
N-METHYLLEUCINE
7
MVA
2
Mod. Amino Acid
N-METHYLVALINE
8
SAR
2
Mod. Amino Acid
SARCOSINE
9
ZN
-1
Ligand/Ion
ZINC ION
[
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]
Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP B:30 , ASP B:32 , SER B:34 , SER B:36 , GLU B:41
BINDING SITE FOR RESIDUE CA B 500
02
AC2
SOFTWARE
ASP B:62 , ASP B:64 , ASN B:66 , GLU B:68 , ASP B:70 , GLU B:73
BINDING SITE FOR RESIDUE CA B 501
03
AC3
SOFTWARE
ASP B:99 , ASP B:101 , ASP B:103 , TYR B:105 , GLU B:110
BINDING SITE FOR RESIDUE CA B 502
04
AC4
SOFTWARE
ASP B:140 , ASP B:142 , ASP B:144 , ARG B:146 , GLU B:151
BINDING SITE FOR RESIDUE CA B 503
05
AC5
SOFTWARE
ASP A:118 , ASN A:150 , HIS A:199 , HIS A:281 , FE A:505
BINDING SITE FOR RESIDUE ZN A 504
06
AC6
SOFTWARE
ASP A:90 , HIS A:92 , ASP A:118 , HIS A:281 , ZN A:504
BINDING SITE FOR RESIDUE FE A 505
07
AC7
SOFTWARE
ASP F:30 , ASP F:32 , SER F:34 , SER F:36 , GLU F:41
BINDING SITE FOR RESIDUE CA F 500
08
AC8
SOFTWARE
ASP F:62 , ASP F:64 , ASN F:66 , GLU F:68 , ASP F:70 , GLU F:73
BINDING SITE FOR RESIDUE CA F 501
09
AC9
SOFTWARE
ASP F:99 , ASP F:101 , ASP F:103 , TYR F:105 , GLU F:110
BINDING SITE FOR RESIDUE CA F 502
10
BC1
SOFTWARE
ASP F:140 , ASP F:142 , ASP F:144 , ARG F:146 , GLU F:151
BINDING SITE FOR RESIDUE CA F 503
11
BC2
SOFTWARE
ASP E:118 , ASN E:150 , HIS E:199 , HIS E:281 , FE E:505
BINDING SITE FOR RESIDUE ZN E 504
12
BC3
SOFTWARE
ASP E:90 , HIS E:92 , ASP E:118 , ZN E:504
BINDING SITE FOR RESIDUE FE E 505
13
BC4
SOFTWARE
SER A:2 , LEU A:312 , TYR A:341 , TRP A:342 , PRO A:344 , TRP A:352 , PHE A:356 , ASN B:122 , ARG C:55 , PHE C:60 , GLN C:63 , GLY C:72 , ALA C:101 , ASN C:102 , GLN C:111 , PHE C:113 , TRP C:121 , LEU C:122 , HIS C:126 , ARG C:148
BINDING SITE FOR CHAIN D OF CYCLOSPORIN A
14
BC5
SOFTWARE
LEU E:312 , VAL E:314 , TYR E:341 , TRP E:342 , PRO E:344 , TRP E:352 , PHE E:356 , ASN F:122 , LEU F:123 , ARG G:55 , PHE G:60 , GLN G:63 , GLY G:72 , ALA G:101 , ASN G:102 , ALA G:103 , GLN G:111 , PHE G:113 , TRP G:121 , LEU G:122 , HIS G:126
BINDING SITE FOR CHAIN H OF CYCLOSPORIN A
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(5, 22)
Info
All PROSITE Patterns/Profiles
1: CSA_PPIASE_2 (C:7-163,G:7-163)
2: EF_HAND_1 (B:30-42,F:140-152)
3: CSA_PPIASE_1 (C:48-65,G:48-65)
4: EF_HAND_2 (B:49-84,F:127-162)
5: SER_THR_PHOSPHATASE (A:147-152,E:147-152)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CSA_PPIASE_2
PS50072
Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.
PPIA_HUMAN
7-163
2
C:7-163
G:7-163
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
CANB1_HUMAN
31-43
63-75
100-112
141-153
8
B:30-42
F:30-42
B:62-74
F:62-74
B:99-111
F:99-111
B:140-152
F:140-152
3
CSA_PPIASE_1
PS00170
Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.
PPIA_HUMAN
48-65
2
C:48-65
G:48-65
4
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
CANB1_HUMAN
50-85
18-46
87-122
128-163
8
B:49-84
F:49-84
B:17-45
F:17-45
B:86-121
F:86-121
B:127-162
F:127-162
5
SER_THR_PHOSPHATASE
PS00125
Serine/threonine specific protein phosphatases signature.
PP2BA_HUMAN
147-152
2
A:147-152
E:147-152
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1m63b_ (B:)
1b: SCOP_d1m63f_ (F:)
2a: SCOP_d1m63c_ (C:)
2b: SCOP_d1m63g_ (G:)
3a: SCOP_d1m63a_ (A:)
3b: SCOP_d1m63e_ (E:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
Calmodulin-like
(356)
Protein domain
:
Calcineurin regulatory subunit (B-chain)
(6)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d1m63b_
B:
1b
d1m63f_
F:
Class
:
All beta proteins
(24004)
Fold
:
Cyclophilin-like
(169)
Superfamily
:
Cyclophilin-like
(169)
Family
:
Cyclophilin (peptidylprolyl isomerase)
(160)
Protein domain
:
Cyclophilin (eukaryotic)
(77)
Human (Homo sapiens), variant A [TaxId: 9606]
(58)
2a
d1m63c_
C:
2b
d1m63g_
G:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Metallo-dependent phosphatases
(115)
Superfamily
:
Metallo-dependent phosphatases
(115)
Family
:
Protein serine/threonine phosphatase
(50)
Protein domain
:
Protein phosphatase-2B (PP-2B, calcineurin A subunit)
(6)
Human (Homo sapiens) [TaxId: 9606]
(5)
3a
d1m63a_
A:
3b
d1m63e_
E:
[
close SCOP info
]
CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1m63E00 (E:14-372)
1b: CATH_1m63A00 (A:1-372)
2a: CATH_1m63B00 (B:12-169)
2b: CATH_1m63F00 (F:10-169)
3a: CATH_1m63C00 (C:1-165)
3b: CATH_1m63G00 (G:1-165)
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)
(
)
Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Purple Acid Phosphatase; chain A, domain 2
(87)
Homologous Superfamily
:
[code=3.60.21.10, no name defined]
(83)
Human (Homo sapiens)
(36)
1a
1m63E00
E:14-372
1b
1m63A00
A:1-372
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Recoverin; domain 1
(474)
Homologous Superfamily
:
EF-hand
(412)
Human (Homo sapiens)
(106)
2a
1m63B00
B:12-169
2b
1m63F00
F:10-169
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Cyclophilin
(95)
Homologous Superfamily
:
Cyclophilin
(95)
Human (Homo sapiens)
(58)
3a
1m63C00
C:1-165
3b
1m63G00
G:1-165
[
close CATH info
]
Pfam Domains
(5, 12)
Info
all PFAM domains
1a: PFAM_Metallophos_1m63E01 (E:83-285)
1b: PFAM_Metallophos_1m63E02 (E:83-285)
2a: PFAM_Pro_isomerase_1m63G01 (G:7-163)
2b: PFAM_Pro_isomerase_1m63G02 (G:7-163)
3a: PFAM_EF_hand_3_1m63F01 (F:22-46)
3b: PFAM_EF_hand_3_1m63F02 (F:22-46)
4a: PFAM_EF_hand_5_1m63F03 (F:90-156)
4b: PFAM_EF_hand_5_1m63F04 (F:90-156)
4c: PFAM_EF_hand_5_1m63F05 (F:90-156)
4d: PFAM_EF_hand_5_1m63F06 (F:90-156)
5a: PFAM_efhand_1m63F07 (F:90-118)
5b: PFAM_efhand_1m63F08 (F:90-118)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Calcineurin
(56)
Family
:
Metallophos
(45)
Homo sapiens (Human)
(15)
1a
Metallophos-1m63E01
E:83-285
1b
Metallophos-1m63E02
E:83-285
Clan
:
Cyclophil-like
(65)
Family
:
Pro_isomerase
(53)
Homo sapiens (Human)
(42)
2a
Pro_isomerase-1m63G01
G:7-163
2b
Pro_isomerase-1m63G02
G:7-163
Clan
:
EF_hand
(270)
Family
:
EF_hand_3
(27)
Homo sapiens (Human)
(6)
3a
EF_hand_3-1m63F01
F:22-46
3b
EF_hand_3-1m63F02
F:22-46
Family
:
EF_hand_5
(126)
Homo sapiens (Human)
(31)
4a
EF_hand_5-1m63F03
F:90-156
4b
EF_hand_5-1m63F04
F:90-156
4c
EF_hand_5-1m63F05
F:90-156
4d
EF_hand_5-1m63F06
F:90-156
Family
:
efhand
(70)
Homo sapiens (Human)
(8)
5a
efhand-1m63F07
F:90-118
5b
efhand-1m63F08
F:90-118
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