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1M5Q
Asym. Unit
Info
Asym.Unit (635 KB)
Biol.Unit 1 (314 KB)
Biol.Unit 2 (315 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A NOVEL SM-LIKE ARCHAEAL PROTEIN FROM PYROBACULUM AEROPHILUM
Authors
:
C. Mura, M. Phillips, A. Kozhukhovsky, D. Eisenberg
Date
:
09 Jul 02 (Deposition) - 18 Mar 03 (Release) - 17 May 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,1,2
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N (1x)
Biol. Unit 2: O,P,Q,R,S,T,U,V,W,X,Y,Z,1,2 (1x)
Keywords
:
Ob-Like Fold, B-Sheet Toroid, 14-Mer, Cadmium-Binding Site, Translation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Mura, M. Phillips, A. Kozhukhovsky, D. Eisenberg
Structure And Assembly Of An Augmented Sm-Like Archaeal Protein 14-Mer
Proc. Natl. Acad. Sci. Usa V. 100 4539 2003
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(5, 144)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
1c: ACETIC ACID (ACYc)
1d: ACETIC ACID (ACYd)
1e: ACETIC ACID (ACYe)
1f: ACETIC ACID (ACYf)
1g: ACETIC ACID (ACYg)
1h: ACETIC ACID (ACYh)
1i: ACETIC ACID (ACYi)
1j: ACETIC ACID (ACYj)
1k: ACETIC ACID (ACYk)
1l: ACETIC ACID (ACYl)
1m: ACETIC ACID (ACYm)
1n: ACETIC ACID (ACYn)
1o: ACETIC ACID (ACYo)
2a: CADMIUM ION (CDa)
2aa: CADMIUM ION (CDaa)
2ab: CADMIUM ION (CDab)
2b: CADMIUM ION (CDb)
2c: CADMIUM ION (CDc)
2d: CADMIUM ION (CDd)
2e: CADMIUM ION (CDe)
2f: CADMIUM ION (CDf)
2g: CADMIUM ION (CDg)
2h: CADMIUM ION (CDh)
2i: CADMIUM ION (CDi)
2j: CADMIUM ION (CDj)
2k: CADMIUM ION (CDk)
2l: CADMIUM ION (CDl)
2m: CADMIUM ION (CDm)
2n: CADMIUM ION (CDn)
2o: CADMIUM ION (CDo)
2p: CADMIUM ION (CDp)
2q: CADMIUM ION (CDq)
2r: CADMIUM ION (CDr)
2s: CADMIUM ION (CDs)
2t: CADMIUM ION (CDt)
2u: CADMIUM ION (CDu)
2v: CADMIUM ION (CDv)
2w: CADMIUM ION (CDw)
2x: CADMIUM ION (CDx)
2y: CADMIUM ION (CDy)
2z: CADMIUM ION (CDz)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
3k: GLYCEROL (GOLk)
3l: GLYCEROL (GOLl)
4a: SELENOMETHIONINE (MSEa)
4aa: SELENOMETHIONINE (MSEaa)
4ab: SELENOMETHIONINE (MSEab)
4ac: SELENOMETHIONINE (MSEac)
4ad: SELENOMETHIONINE (MSEad)
4ae: SELENOMETHIONINE (MSEae)
4af: SELENOMETHIONINE (MSEaf)
4ag: SELENOMETHIONINE (MSEag)
4ah: SELENOMETHIONINE (MSEah)
4ai: SELENOMETHIONINE (MSEai)
4aj: SELENOMETHIONINE (MSEaj)
4ak: SELENOMETHIONINE (MSEak)
4al: SELENOMETHIONINE (MSEal)
4am: SELENOMETHIONINE (MSEam)
4an: SELENOMETHIONINE (MSEan)
4ao: SELENOMETHIONINE (MSEao)
4ap: SELENOMETHIONINE (MSEap)
4aq: SELENOMETHIONINE (MSEaq)
4ar: SELENOMETHIONINE (MSEar)
4as: SELENOMETHIONINE (MSEas)
4at: SELENOMETHIONINE (MSEat)
4au: SELENOMETHIONINE (MSEau)
4av: SELENOMETHIONINE (MSEav)
4aw: SELENOMETHIONINE (MSEaw)
4ax: SELENOMETHIONINE (MSEax)
4ay: SELENOMETHIONINE (MSEay)
4az: SELENOMETHIONINE (MSEaz)
4b: SELENOMETHIONINE (MSEb)
4ba: SELENOMETHIONINE (MSEba)
4bb: SELENOMETHIONINE (MSEbb)
4bc: SELENOMETHIONINE (MSEbc)
4bd: SELENOMETHIONINE (MSEbd)
4be: SELENOMETHIONINE (MSEbe)
4bf: SELENOMETHIONINE (MSEbf)
4bg: SELENOMETHIONINE (MSEbg)
4bh: SELENOMETHIONINE (MSEbh)
4bi: SELENOMETHIONINE (MSEbi)
4bj: SELENOMETHIONINE (MSEbj)
4bk: SELENOMETHIONINE (MSEbk)
4bl: SELENOMETHIONINE (MSEbl)
4bm: SELENOMETHIONINE (MSEbm)
4bn: SELENOMETHIONINE (MSEbn)
4bo: SELENOMETHIONINE (MSEbo)
4bp: SELENOMETHIONINE (MSEbp)
4bq: SELENOMETHIONINE (MSEbq)
4br: SELENOMETHIONINE (MSEbr)
4bs: SELENOMETHIONINE (MSEbs)
4bt: SELENOMETHIONINE (MSEbt)
4bu: SELENOMETHIONINE (MSEbu)
4bv: SELENOMETHIONINE (MSEbv)
4bw: SELENOMETHIONINE (MSEbw)
4bx: SELENOMETHIONINE (MSEbx)
4by: SELENOMETHIONINE (MSEby)
4bz: SELENOMETHIONINE (MSEbz)
4c: SELENOMETHIONINE (MSEc)
4ca: SELENOMETHIONINE (MSEca)
4cb: SELENOMETHIONINE (MSEcb)
4cc: SELENOMETHIONINE (MSEcc)
4cd: SELENOMETHIONINE (MSEcd)
4ce: SELENOMETHIONINE (MSEce)
4cf: SELENOMETHIONINE (MSEcf)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
4i: SELENOMETHIONINE (MSEi)
4j: SELENOMETHIONINE (MSEj)
4k: SELENOMETHIONINE (MSEk)
4l: SELENOMETHIONINE (MSEl)
4m: SELENOMETHIONINE (MSEm)
4n: SELENOMETHIONINE (MSEn)
4o: SELENOMETHIONINE (MSEo)
4p: SELENOMETHIONINE (MSEp)
4q: SELENOMETHIONINE (MSEq)
4r: SELENOMETHIONINE (MSEr)
4s: SELENOMETHIONINE (MSEs)
4t: SELENOMETHIONINE (MSEt)
4u: SELENOMETHIONINE (MSEu)
4v: SELENOMETHIONINE (MSEv)
4w: SELENOMETHIONINE (MSEw)
4x: SELENOMETHIONINE (MSEx)
4y: SELENOMETHIONINE (MSEy)
4z: SELENOMETHIONINE (MSEz)
5a: SODIUM ION (NAa)
5b: SODIUM ION (NAb)
5c: SODIUM ION (NAc)
5d: SODIUM ION (NAd)
5e: SODIUM ION (NAe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
15
Ligand/Ion
ACETIC ACID
2
CD
28
Ligand/Ion
CADMIUM ION
3
GOL
12
Ligand/Ion
GLYCEROL
4
MSE
84
Mod. Amino Acid
SELENOMETHIONINE
5
NA
5
Ligand/Ion
SODIUM ION
[
close Hetero Component info
]
Sites
(59, 59)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:39 , HOH A:4034 , HOH A:4055 , GLU B:84 , HOH B:3008
BINDING SITE FOR RESIDUE CD A 2001
02
AC2
SOFTWARE
HIS B:39 , HOH B:3003 , GLU C:84 , HOH C:194
BINDING SITE FOR RESIDUE CD B 2002
03
AC3
SOFTWARE
HIS C:39 , HOH C:144 , HOH C:179 , GLU D:84
BINDING SITE FOR RESIDUE CD D 2003
04
AC4
SOFTWARE
HIS D:39 , HOH D:2005 , GLU E:84 , HOH E:2029
BINDING SITE FOR RESIDUE CD D 2004
05
AC5
SOFTWARE
HIS E:39 , HOH E:2008 , GLU F:84 , HOH F:5073
BINDING SITE FOR RESIDUE CD E 2005
06
AC6
SOFTWARE
HIS F:39 , HOH F:5016 , HOH F:5049 , GLU G:84 , HOH G:4044
BINDING SITE FOR RESIDUE CD F 2006
07
AC7
SOFTWARE
GLU A:84 , HIS G:39 , HOH G:4003 , HOH G:4058
BINDING SITE FOR RESIDUE CD A 2007
08
AC8
SOFTWARE
HIS H:39 , GOL H:4002 , HOH H:5061 , GLU I:15 , HOH I:5064
BINDING SITE FOR RESIDUE CD H 2008
09
AC9
SOFTWARE
HIS I:39 , HOH I:5045 , GLU J:15
BINDING SITE FOR RESIDUE CD I 2009
10
BC1
SOFTWARE
HIS J:39 , HOH J:4010 , HOH K:5019
BINDING SITE FOR RESIDUE CD J 2010
11
BC2
SOFTWARE
LYS D:91 , HIS K:39 , HOH K:5020 , GLU L:15 , HOH L:2027
BINDING SITE FOR RESIDUE CD K 2011
12
BC3
SOFTWARE
HIS L:39 , HOH L:2016 , HOH L:2039 , HOH L:2058
BINDING SITE FOR RESIDUE CD L 2012
13
BC4
SOFTWARE
HIS M:39 , HOH M:5014 , HOH M:5025 , HOH M:5101
BINDING SITE FOR RESIDUE CD M 2013
14
BC5
SOFTWARE
GLU H:15 , HIS N:39 , HOH N:5038
BINDING SITE FOR RESIDUE CD H 2014
15
BC6
SOFTWARE
HIS O:39 , HOH O:2023 , HOH O:2079 , GLU P:84 , HOH P:2057
BINDING SITE FOR RESIDUE CD P 2015
16
BC7
SOFTWARE
HIS P:39 , HOH P:2025 , GLU Q:84 , HOH Q:2027
BINDING SITE FOR RESIDUE CD P 2016
17
BC8
SOFTWARE
HIS Q:39 , HOH Q:2018 , GLU R:84 , HOH R:4026
BINDING SITE FOR RESIDUE CD Q 2017
18
BC9
SOFTWARE
HIS R:39 , HOH R:4013 , HOH R:4050 , GLU S:84
BINDING SITE FOR RESIDUE CD R 2018
19
CC1
SOFTWARE
HIS S:39 , HOH S:3023 , HOH S:3034 , GLU T:84 , HOH T:184
BINDING SITE FOR RESIDUE CD S 2019
20
CC2
SOFTWARE
HIS T:39 , HOH T:142 , HOH T:153 , GLU U:84 , HOH U:2062
BINDING SITE FOR RESIDUE CD U 2020
21
CC3
SOFTWARE
GLU O:84 , HIS U:39 , HOH U:2027
BINDING SITE FOR RESIDUE CD O 2021
22
CC4
SOFTWARE
HIS V:39 , HOH V:5028 , HOH V:5041 , HOH V:5113 , HOH V:5122
BINDING SITE FOR RESIDUE CD V 2022
23
CC5
SOFTWARE
HIS W:39 , HOH W:5056 , HOH W:5057 , HOH W:5076 , HOH W:5081
BINDING SITE FOR RESIDUE CD W 2023
24
CC6
SOFTWARE
HIS X:39 , HOH X:5036 , HOH X:5070 , HOH X:5095
BINDING SITE FOR RESIDUE CD X 2024
25
CC7
SOFTWARE
HIS Y:39 , HOH Y:5085 , GLU Z:15 , HOH Z:5060
BINDING SITE FOR RESIDUE CD Y 2025
26
CC8
SOFTWARE
HIS Z:39 , HOH Z:5031 , HOH Z:5042 , HOH Z:5057
BINDING SITE FOR RESIDUE CD Z 2026
27
CC9
SOFTWARE
HIS 1:39 , GLU 2:15 , HOH R:4021
BINDING SITE FOR RESIDUE CD 1 2027
28
DC1
SOFTWARE
HIS 2:39 , HOH 2:5049 , HOH Q:2034 , GLU V:15
BINDING SITE FOR RESIDUE CD 2 2028
29
DC2
SOFTWARE
GLU B:58 , LYS C:55
BINDING SITE FOR RESIDUE NA B 3001
30
DC3
SOFTWARE
HOH R:4056
BINDING SITE FOR RESIDUE NA S 3002
31
DC4
SOFTWARE
HOH V:5062 , HOH V:5089
BINDING SITE FOR RESIDUE NA V 3003
32
DC5
SOFTWARE
HOH Q:2076
BINDING SITE FOR RESIDUE NA R 3005
33
DC6
SOFTWARE
ALA G:86 , GLU G:90 , VAL G:97 , HOH G:4011 , HOH G:4048 , GLY H:21 , HIS H:39 , ALA H:50
BINDING SITE FOR RESIDUE GOL G 4001
34
DC7
SOFTWARE
GLU G:90 , HIS H:39 , ASN H:61 , ARG H:62 , CD H:2008 , HOH H:5023 , HOH H:5034 , ARG I:79
BINDING SITE FOR RESIDUE GOL H 4002
35
DC8
SOFTWARE
GLU M:32 , GLU M:58 , PHE M:60 , HOH M:5053 , GLN N:25 , HOH N:5062
BINDING SITE FOR RESIDUE GOL M 4003
36
DC9
SOFTWARE
GLU O:90 , HOH O:2049 , ALA W:50 , ASN W:61 , ARG W:62 , ARG X:79 , GLU X:116 , HOH X:5024 , HOH X:5045
BINDING SITE FOR RESIDUE GOL X 4004
37
EC1
SOFTWARE
GLU J:58 , PHE J:60 , GLN K:25 , LYS K:55
BINDING SITE FOR RESIDUE GOL J 4005
38
EC2
SOFTWARE
GLU W:32 , GLU W:58 , HOH W:5045 , HOH W:5074 , GLN X:25 , VAL X:33 , LYS X:55
BINDING SITE FOR RESIDUE GOL W 4006
39
EC3
SOFTWARE
ASN 1:61 , ARG 1:62 , ARG 2:79 , GLU 2:116 , GLU R:90 , GLY R:95 , HOH R:4021 , HOH R:4022
BINDING SITE FOR RESIDUE GOL R 4007
40
EC4
SOFTWARE
GLU P:90 , PRO P:94 , HOH P:2073 , HIS V:39 , ASN V:61 , ARG V:62 , HOH V:5104 , ARG W:79 , GLU W:116 , HOH W:5096
BINDING SITE FOR RESIDUE GOL V 4008
41
EC5
SOFTWARE
GLU 2:32 , GLU 2:58 , PHE 2:60 , GLN V:25 , VAL V:33
BINDING SITE FOR RESIDUE GOL 2 4009
42
EC6
SOFTWARE
GLU 1:32 , TYR 1:34 , GLU 1:58 , PHE 1:60 , GLN 2:25 , LYS 2:55 , HOH 2:5070
BINDING SITE FOR RESIDUE GOL 1 4010
43
EC7
SOFTWARE
GLU H:32 , GLU H:58 , GLN I:25 , LYS I:55
BINDING SITE FOR RESIDUE GOL H 4011
44
EC8
SOFTWARE
GLU A:32 , GLU A:58 , PHE A:60 , GLN B:25 , VAL B:33
BINDING SITE FOR RESIDUE GOL A 4012
45
EC9
SOFTWARE
PHE P:93 , ARG P:128 , THR W:103 , VAL W:105 , ARG W:113
BINDING SITE FOR RESIDUE ACY W 5001
46
FC1
SOFTWARE
PHE O:93 , ARG O:128 , THR X:103 , VAL X:105 , ARG X:113
BINDING SITE FOR RESIDUE ACY X 5002
47
FC2
SOFTWARE
PHE C:93 , ARG C:128 , THR M:103 , VAL M:105 , ARG M:113 , HOH M:5030
BINDING SITE FOR RESIDUE ACY M 5003
48
FC3
SOFTWARE
GLU I:23 , SER I:75 , THR I:76 , GLU I:77
BINDING SITE FOR RESIDUE ACY I 5004
49
FC4
SOFTWARE
ILE 2:100 , THR 2:103 , VAL 2:105 , ARG 2:113 , PHE R:93 , VAL R:125 , ARG R:128
BINDING SITE FOR RESIDUE ACY 2 5005
50
FC5
SOFTWARE
PHE T:93 , PRO T:124 , THR Z:103 , VAL Z:105 , ARG Z:113
BINDING SITE FOR RESIDUE ACY Z 5006
51
FC6
SOFTWARE
PHE Q:93 , VAL Q:125 , THR V:103 , VAL V:105 , ARG V:113 , HOH V:5020
BINDING SITE FOR RESIDUE ACY V 5007
52
FC7
SOFTWARE
PHE U:93 , VAL U:125 , ARG U:128 , THR Y:103 , ARG Y:113 , HOH Y:5025
BINDING SITE FOR RESIDUE ACY Y 5008
53
FC8
SOFTWARE
PHE B:93 , ARG B:128 , ILE N:100 , THR N:103 , VAL N:105 , ARG N:113 , HOH N:5070
BINDING SITE FOR RESIDUE ACY N 5009
54
FC9
SOFTWARE
PHE G:93 , VAL G:125 , ARG G:128 , ILE I:100 , THR I:103 , VAL I:105 , ARG I:113 , HOH I:5066
BINDING SITE FOR RESIDUE ACY I 5010
55
GC1
SOFTWARE
LEU W:19 , GLU W:23 , SER W:75 , THR W:76 , GLU W:77 , HOH W:5031 , HOH W:5046
BINDING SITE FOR RESIDUE ACY W 5011
56
GC2
SOFTWARE
PHE A:93 , ARG A:128 , ILE H:100 , THR H:103 , VAL H:105 , ARG H:113 , HOH H:5070
BINDING SITE FOR RESIDUE ACY H 5012
57
GC3
SOFTWARE
PHE E:93 , VAL E:125 , ARG E:128 , ILE K:100 , THR K:103 , VAL K:105 , ARG K:113 , HOH K:5049
BINDING SITE FOR RESIDUE ACY K 5013
58
GC4
SOFTWARE
ILE 1:100 , THR 1:103 , VAL 1:105 , ARG 1:113 , HOH 1:5048 , PHE S:93
BINDING SITE FOR RESIDUE ACY 1 5014
59
GC5
SOFTWARE
GLU F:32 , GLU F:58 , GLN G:25
BINDING SITE FOR RESIDUE ACY F 5015
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 28)
Info
All SCOP Domains
1a: SCOP_d1m5q1_ (1:)
1b: SCOP_d1m5q2_ (2:)
1c: SCOP_d1m5qi_ (I:)
1d: SCOP_d1m5qj_ (J:)
1e: SCOP_d1m5qk_ (K:)
1f: SCOP_d1m5ql_ (L:)
1g: SCOP_d1m5qm_ (M:)
1h: SCOP_d1m5qn_ (N:)
1i: SCOP_d1m5qo_ (O:)
1j: SCOP_d1m5qp_ (P:)
1k: SCOP_d1m5qq_ (Q:)
1l: SCOP_d1m5qr_ (R:)
1m: SCOP_d1m5qa_ (A:)
1n: SCOP_d1m5qs_ (S:)
1o: SCOP_d1m5qt_ (T:)
1p: SCOP_d1m5qu_ (U:)
1q: SCOP_d1m5qv_ (V:)
1r: SCOP_d1m5qw_ (W:)
1s: SCOP_d1m5qx_ (X:)
1t: SCOP_d1m5qy_ (Y:)
1u: SCOP_d1m5qz_ (Z:)
1v: SCOP_d1m5qb_ (B:)
1w: SCOP_d1m5qc_ (C:)
1x: SCOP_d1m5qd_ (D:)
1y: SCOP_d1m5qe_ (E:)
1z: SCOP_d1m5qf_ (F:)
1aa: SCOP_d1m5qg_ (G:)
1ab: SCOP_d1m5qh_ (H:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Sm-like fold
(103)
Superfamily
:
Sm-like ribonucleoproteins
(95)
Family
:
Sm motif of small nuclear ribonucleoproteins, SNRNP
(31)
Protein domain
:
Sm-Like archaeal protein Smap3
(1)
Pyrobaculum aerophilum [TaxId: 13773]
(1)
1a
d1m5q1_
1:
1b
d1m5q2_
2:
1c
d1m5qi_
I:
1d
d1m5qj_
J:
1e
d1m5qk_
K:
1f
d1m5ql_
L:
1g
d1m5qm_
M:
1h
d1m5qn_
N:
1i
d1m5qo_
O:
1j
d1m5qp_
P:
1k
d1m5qq_
Q:
1l
d1m5qr_
R:
1m
d1m5qa_
A:
1n
d1m5qs_
S:
1o
d1m5qt_
T:
1p
d1m5qu_
U:
1q
d1m5qv_
V:
1r
d1m5qw_
W:
1s
d1m5qx_
X:
1t
d1m5qy_
Y:
1u
d1m5qz_
Z:
1v
d1m5qb_
B:
1w
d1m5qc_
C:
1x
d1m5qd_
D:
1y
d1m5qe_
E:
1z
d1m5qf_
F:
1aa
d1m5qg_
G:
1ab
d1m5qh_
H:
[
close SCOP info
]
CATH Domains
(2, 56)
Info
all CATH domains
1a: CATH_1m5q102 (1:80-137)
1b: CATH_1m5q202 (2:80-137)
1c: CATH_1m5qW02 (W:80-137)
1d: CATH_1m5qX02 (X:80-137)
1e: CATH_1m5qY02 (Y:80-137)
1f: CATH_1m5qZ02 (Z:80-137)
1g: CATH_1m5qA02 (A:80-135)
1h: CATH_1m5qC02 (C:79-137)
1i: CATH_1m5qD02 (D:80-135)
1j: CATH_1m5qB02 (B:79-135)
1k: CATH_1m5qE02 (E:79-135)
1l: CATH_1m5qF02 (F:79-135)
1m: CATH_1m5qH02 (H:80-137)
1n: CATH_1m5qG02 (G:79-135)
1o: CATH_1m5qO02 (O:79-135)
1p: CATH_1m5qP02 (P:79-135)
1q: CATH_1m5qQ02 (Q:79-135)
1r: CATH_1m5qR02 (R:79-135)
1s: CATH_1m5qS02 (S:79-135)
1t: CATH_1m5qT02 (T:79-135)
1u: CATH_1m5qU02 (U:79-135)
1v: CATH_1m5qI02 (I:80-137)
1w: CATH_1m5qJ02 (J:80-137)
1x: CATH_1m5qK02 (K:80-137)
1y: CATH_1m5qL02 (L:80-137)
1z: CATH_1m5qM02 (M:80-137)
1aa: CATH_1m5qN02 (N:80-137)
1ab: CATH_1m5qV02 (V:80-137)
2a: CATH_1m5q101 (1:12-79)
2b: CATH_1m5qD01 (D:12-79)
2c: CATH_1m5qH01 (H:12-79)
2d: CATH_1m5qI01 (I:12-79)
2e: CATH_1m5qJ01 (J:12-79)
2f: CATH_1m5qK01 (K:12-79)
2g: CATH_1m5qL01 (L:12-79)
2h: CATH_1m5qM01 (M:12-79)
2i: CATH_1m5qN01 (N:12-79)
2j: CATH_1m5qV01 (V:12-79)
2k: CATH_1m5qW01 (W:12-79)
2l: CATH_1m5qX01 (X:12-79)
2m: CATH_1m5qY01 (Y:12-79)
2n: CATH_1m5qZ01 (Z:12-79)
2o: CATH_1m5qB01 (B:12-78)
2p: CATH_1m5qC01 (C:12-78)
2q: CATH_1m5qE01 (E:12-78)
2r: CATH_1m5qF01 (F:12-78)
2s: CATH_1m5qG01 (G:12-78)
2t: CATH_1m5qO01 (O:12-78)
2u: CATH_1m5qP01 (P:12-78)
2v: CATH_1m5qQ01 (Q:12-78)
2w: CATH_1m5qR01 (R:12-78)
2x: CATH_1m5qS01 (S:12-78)
2y: CATH_1m5qT01 (T:12-78)
2z: CATH_1m5qU01 (U:12-78)
2aa: CATH_1m5q201 (2:12-79)
2ab: CATH_1m5qA01 (A:12-79)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
TATA-Binding Protein
(118)
Homologous Superfamily
:
sm-like archaeal protein, C-terminal domain
(1)
Pyrobaculum aerophilum. Organism_taxid: 13773.
(1)
1a
1m5q102
1:80-137
1b
1m5q202
2:80-137
1c
1m5qW02
W:80-137
1d
1m5qX02
X:80-137
1e
1m5qY02
Y:80-137
1f
1m5qZ02
Z:80-137
1g
1m5qA02
A:80-135
1h
1m5qC02
C:79-137
1i
1m5qD02
D:80-135
1j
1m5qB02
B:79-135
1k
1m5qE02
E:79-135
1l
1m5qF02
F:79-135
1m
1m5qH02
H:80-137
1n
1m5qG02
G:79-135
1o
1m5qO02
O:79-135
1p
1m5qP02
P:79-135
1q
1m5qQ02
Q:79-135
1r
1m5qR02
R:79-135
1s
1m5qS02
S:79-135
1t
1m5qT02
T:79-135
1u
1m5qU02
U:79-135
1v
1m5qI02
I:80-137
1w
1m5qJ02
J:80-137
1x
1m5qK02
K:80-137
1y
1m5qL02
L:80-137
1z
1m5qM02
M:80-137
1aa
1m5qN02
N:80-137
1ab
1m5qV02
V:80-137
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
[code=2.30.30.100, no name defined]
(40)
Pyrobaculum aerophilum. Organism_taxid: 13773.
(2)
2a
1m5q101
1:12-79
2b
1m5qD01
D:12-79
2c
1m5qH01
H:12-79
2d
1m5qI01
I:12-79
2e
1m5qJ01
J:12-79
2f
1m5qK01
K:12-79
2g
1m5qL01
L:12-79
2h
1m5qM01
M:12-79
2i
1m5qN01
N:12-79
2j
1m5qV01
V:12-79
2k
1m5qW01
W:12-79
2l
1m5qX01
X:12-79
2m
1m5qY01
Y:12-79
2n
1m5qZ01
Z:12-79
2o
1m5qB01
B:12-78
2p
1m5qC01
C:12-78
2q
1m5qE01
E:12-78
2r
1m5qF01
F:12-78
2s
1m5qG01
G:12-78
2t
1m5qO01
O:12-78
2u
1m5qP01
P:12-78
2v
1m5qQ01
Q:12-78
2w
1m5qR01
R:12-78
2x
1m5qS01
S:12-78
2y
1m5qT01
T:12-78
2z
1m5qU01
U:12-78
2aa
1m5q201
2:12-79
2ab
1m5qA01
A:12-79
[
close CATH info
]
Pfam Domains
(1, 28)
Info
all PFAM domains
1a: PFAM_SM_ATX_1m5qZ01 (Z:12-93)
1b: PFAM_SM_ATX_1m5qZ02 (Z:12-93)
1c: PFAM_SM_ATX_1m5qZ03 (Z:12-93)
1d: PFAM_SM_ATX_1m5qZ04 (Z:12-93)
1e: PFAM_SM_ATX_1m5qZ05 (Z:12-93)
1f: PFAM_SM_ATX_1m5qZ06 (Z:12-93)
1g: PFAM_SM_ATX_1m5qZ07 (Z:12-93)
1h: PFAM_SM_ATX_1m5qZ08 (Z:12-93)
1i: PFAM_SM_ATX_1m5qZ09 (Z:12-93)
1j: PFAM_SM_ATX_1m5qZ10 (Z:12-93)
1k: PFAM_SM_ATX_1m5qZ11 (Z:12-93)
1l: PFAM_SM_ATX_1m5qZ12 (Z:12-93)
1m: PFAM_SM_ATX_1m5qZ13 (Z:12-93)
1n: PFAM_SM_ATX_1m5qZ14 (Z:12-93)
1o: PFAM_SM_ATX_1m5qZ15 (Z:12-93)
1p: PFAM_SM_ATX_1m5qZ16 (Z:12-93)
1q: PFAM_SM_ATX_1m5qZ17 (Z:12-93)
1r: PFAM_SM_ATX_1m5qZ18 (Z:12-93)
1s: PFAM_SM_ATX_1m5qZ19 (Z:12-93)
1t: PFAM_SM_ATX_1m5qZ20 (Z:12-93)
1u: PFAM_SM_ATX_1m5qZ21 (Z:12-93)
1v: PFAM_SM_ATX_1m5qZ22 (Z:12-93)
1w: PFAM_SM_ATX_1m5qZ23 (Z:12-93)
1x: PFAM_SM_ATX_1m5qZ24 (Z:12-93)
1y: PFAM_SM_ATX_1m5qZ25 (Z:12-93)
1z: PFAM_SM_ATX_1m5qZ26 (Z:12-93)
1aa: PFAM_SM_ATX_1m5qZ27 (Z:12-93)
1ab: PFAM_SM_ATX_1m5qZ28 (Z:12-93)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Sm-like
(17)
Family
:
SM-ATX
(1)
Pyrobaculum aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
(1)
1a
SM-ATX-1m5qZ01
Z:12-93
1b
SM-ATX-1m5qZ02
Z:12-93
1c
SM-ATX-1m5qZ03
Z:12-93
1d
SM-ATX-1m5qZ04
Z:12-93
1e
SM-ATX-1m5qZ05
Z:12-93
1f
SM-ATX-1m5qZ06
Z:12-93
1g
SM-ATX-1m5qZ07
Z:12-93
1h
SM-ATX-1m5qZ08
Z:12-93
1i
SM-ATX-1m5qZ09
Z:12-93
1j
SM-ATX-1m5qZ10
Z:12-93
1k
SM-ATX-1m5qZ11
Z:12-93
1l
SM-ATX-1m5qZ12
Z:12-93
1m
SM-ATX-1m5qZ13
Z:12-93
1n
SM-ATX-1m5qZ14
Z:12-93
1o
SM-ATX-1m5qZ15
Z:12-93
1p
SM-ATX-1m5qZ16
Z:12-93
1q
SM-ATX-1m5qZ17
Z:12-93
1r
SM-ATX-1m5qZ18
Z:12-93
1s
SM-ATX-1m5qZ19
Z:12-93
1t
SM-ATX-1m5qZ20
Z:12-93
1u
SM-ATX-1m5qZ21
Z:12-93
1v
SM-ATX-1m5qZ22
Z:12-93
1w
SM-ATX-1m5qZ23
Z:12-93
1x
SM-ATX-1m5qZ24
Z:12-93
1y
SM-ATX-1m5qZ25
Z:12-93
1z
SM-ATX-1m5qZ26
Z:12-93
1aa
SM-ATX-1m5qZ27
Z:12-93
1ab
SM-ATX-1m5qZ28
Z:12-93
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