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1M5E
Biol. Unit 1
Info
Asym.Unit (151 KB)
Biol.Unit 1 (97 KB)
Biol.Unit 2 (102 KB)
Biol.Unit 3 (146 KB)
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(1)
Title
:
X-RAY STRUCTURE OF THE GLUR2 LIGAND BINDING CORE (S1S2J) IN COMPLEX WITH ACPA AT 1.46 A RESOLUTION
Authors
:
A. Hogner, J. S. Kastrup, R. Jin, T. Liljefors, M. L. Mayer, J. Egebjerg, I. K. Larsen, E. Gouaux
Date
:
09 Jul 02 (Deposition) - 18 Sep 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.46
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B (2x)
Biol. Unit 3: A,B,C (1x)
Keywords
:
Ionotropic Glutamate Receptor, Glur2, Ligand Binding Core, Agonist Complex. , Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Hogner, J. S. Kastrup, R. Jin, T. Liljefors, M. L. Mayer, J. Egebjerg, I. K. Larsen, E. Gouaux
Structural Basis For Ampa Receptor Activation And Ligand Selectivity: Crystal Structures Of Five Agonist Complexes With The Glur2 Ligand-Binding Core
J. Mol. Biol. V. 322 93 2002
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: (S)-2-AMINO-3-(3-CARBOXY-5-METHYLI... (AM1a)
2b: (S)-2-AMINO-3-(3-CARBOXY-5-METHYLI... (AM1b)
2c: (S)-2-AMINO-3-(3-CARBOXY-5-METHYLI... (AM1c)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
3g: ZINC ION (ZNg)
3h: ZINC ION (ZNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
-1
Ligand/Ion
ACETATE ION
2
AM1
2
Ligand/Ion
(S)-2-AMINO-3-(3-CARBOXY-5-METHYLISOXAZOL-4-YL)PROPIONIC ACID
3
ZN
-1
Ligand/Ion
ZINC ION
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC8 (SOFTWARE)
08: AC9 (SOFTWARE)
09: BC1 (SOFTWARE)
10: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ZN A:1710 , LYS B:144 , PHE B:170 , ZN B:1711
BINDING SITE FOR RESIDUE ACT B 1703
02
AC2
SOFTWARE
HIS A:23 , HOH A:2015 , HOH A:2016 , ASP C:65
BINDING SITE FOR RESIDUE ZN A 1704
03
AC3
SOFTWARE
GLU A:42 , HIS A:46 , HOH A:2011 , GLU B:166 , ZN B:1711
BINDING SITE FOR RESIDUE ZN A 1705
04
AC4
SOFTWARE
HIS B:23 , GLU B:30 , HIS C:23 , HOH C:1981
BINDING SITE FOR RESIDUE ZN B 1706
05
AC5
SOFTWARE
GLU A:166 , GLU B:42 , HIS B:46 , LEU B:241 , HOH B:1819
BINDING SITE FOR RESIDUE ZN B 1707
06
AC6
SOFTWARE
GLU C:42 , HIS C:46
BINDING SITE FOR RESIDUE ZN C 1708
07
AC8
SOFTWARE
LYS A:45 , ACT B:1703 , ZN B:1711 , HOH B:2057 , HOH B:2095 , HOH B:2098
BINDING SITE FOR RESIDUE ZN A 1710
08
AC9
SOFTWARE
ZN A:1705 , ZN A:1710 , HOH A:2011 , ACT B:1703 , HOH B:1944 , HOH B:2094 , HOH B:2095
BINDING SITE FOR RESIDUE ZN B 1711
09
BC1
SOFTWARE
TYR A:61 , PRO A:89 , LEU A:90 , THR A:91 , ARG A:96 , GLY A:141 , SER A:142 , THR A:143 , LEU A:192 , GLU A:193 , MET A:196 , TYR A:220 , HOH A:1753 , HOH A:1766
BINDING SITE FOR RESIDUE AM1 A 1700
10
BC3
SOFTWARE
TYR C:61 , PRO C:89 , LEU C:90 , THR C:91 , ARG C:96 , GLY C:141 , SER C:142 , THR C:143 , LEU C:192 , GLU C:193 , MET C:196 , TYR C:220 , HOH C:1736 , HOH C:1739
BINDING SITE FOR RESIDUE AM1 C 1702
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1m5ea_ (A:)
1b: SCOP_d1m5eb_ (B:)
1c: SCOP_d1m5ec_ (C:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Phosphate binding protein-like
(463)
Protein domain
:
Glutamate receptor ligand binding core
(127)
Norway rat (Rattus norvegicus), GluR2 [TaxId: 10116]
(115)
1a
d1m5ea_
A:
1b
d1m5eb_
B:
1c
d1m5ec_
C:
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1m5eA02 (A:4-109,A:219-258)
1b: CATH_1m5eA01 (A:110-218)
1c: CATH_1m5eB01 (B:110-218)
1d: CATH_1m5eC01 (C:110-218)
1e: CATH_1m5eB02 (B:4-109,B:219-258)
1f: CATH_1m5eC02 (C:4-109,C:219-258)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
D-Maltodextrin-Binding Protein; domain 2
(600)
Homologous Superfamily
:
Periplasmic binding protein-like II
(486)
Norway rat (Rattus norvegicus)
(84)
1a
1m5eA02
A:4-109,A:219-258
1b
1m5eA01
A:110-218
1c
1m5eB01
B:110-218
1d
1m5eC01
C:110-218
1e
1m5eB02
B:4-109,B:219-258
1f
1m5eC02
C:4-109,C:219-258
[
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Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_Lig_chan_1m5eC01 (C:119-261)
1b: PFAM_Lig_chan_1m5eC02 (C:119-261)
1c: PFAM_Lig_chan_1m5eC03 (C:119-261)
2a: PFAM_Lig_chan_Glu_bd_1m5eC04 (C:15-80)
2b: PFAM_Lig_chan_Glu_bd_1m5eC05 (C:15-80)
2c: PFAM_Lig_chan_Glu_bd_1m5eC06 (C:15-80)
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Clans
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Clan
:
Ion_channel
(150)
Family
:
Lig_chan
(109)
Rattus norvegicus (Rat)
(101)
1a
Lig_chan-1m5eC01
C:119-261
1b
Lig_chan-1m5eC02
C:119-261
1c
Lig_chan-1m5eC03
C:119-261
Clan
:
PBP
(391)
Family
:
Lig_chan-Glu_bd
(91)
Rattus norvegicus (Rat)
(86)
2a
Lig_chan-Glu_bd-1m5eC04
C:15-80
2b
Lig_chan-Glu_bd-1m5eC05
C:15-80
2c
Lig_chan-Glu_bd-1m5eC06
C:15-80
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (151 KB)
Header - Asym.Unit
Biol.Unit 1 (97 KB)
Header - Biol.Unit 1
Biol.Unit 2 (102 KB)
Header - Biol.Unit 2
Biol.Unit 3 (146 KB)
Header - Biol.Unit 3
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