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1M4S
Asym. Unit
Info
Asym.Unit (258 KB)
Biol.Unit 1 (251 KB)
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(1)
Title
:
BIOSYNTHETIC THIOLASE, CYS89 ACETYLATED, UNLIGANDED FORM
Authors
:
P. Kursula, J. Ojala, A. -M. Lambeir, R. K. Wierenga
Date
:
03 Jul 02 (Deposition) - 29 Nov 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.87
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Thiolase Fold, Acetylated Intermediate, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Kursula, J. Ojala, A. -M. Lambeir, R. K. Wierenga
The Catalytic Cycle Of Biosynthetic Thiolase: A Conformational Journey Of An Acetyl Group Through Four Binding Modes And Two Oxyanion Holes
Biochemistry V. 41 15543 2002
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Hetero Components
(3, 12)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
2a: S-ACETYL-CYSTEINE (SCYa)
2b: S-ACETYL-CYSTEINE (SCYb)
2c: S-ACETYL-CYSTEINE (SCYc)
2d: S-ACETYL-CYSTEINE (SCYd)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
4
Ligand/Ion
GLYCEROL
2
SCY
4
Mod. Amino Acid
S-ACETYL-CYSTEINE
3
SO4
4
Ligand/Ion
SULFATE ION
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:260 , ALA A:262 , GLU A:263 , ARG A:266
BINDING SITE FOR RESIDUE SO4 A 9720
2
AC2
SOFTWARE
LYS A:298 , ARG A:302 , HOH A:9939
BINDING SITE FOR RESIDUE SO4 A 9722
3
AC3
SOFTWARE
HIS A:156 , SER A:247 , ALA A:318 , PHE A:319 , HIS A:348 , HOH A:433 , HOH A:498 , HOH A:517 , HOH A:524 , HOH A:9781
BINDING SITE FOR RESIDUE GOL A 5393
4
AC4
SOFTWARE
ALA A:37 , ARG A:41 , ILE A:199 , HOH A:407 , HOH A:462 , HOH A:9855 , HOH A:9921
BINDING SITE FOR RESIDUE GOL A 5394
5
AC5
SOFTWARE
LYS B:298 , ARG B:302 , HOH B:515 , HOH B:9863
BINDING SITE FOR RESIDUE SO4 B 9719
6
AC6
SOFTWARE
SER B:260 , ARG B:266 , HOH B:9870
BINDING SITE FOR RESIDUE SO4 B 9721
7
AC7
SOFTWARE
LEU B:148 , HIS B:156 , SER B:247 , GLY B:248 , LEU B:249 , HOH B:468 , HOH B:9779
BINDING SITE FOR RESIDUE GOL B 6393
8
AC8
SOFTWARE
ALA B:37 , ARG B:41 , ILE B:199 , HOH B:442 , HOH B:503 , HOH B:9911 , HOH B:9913
BINDING SITE FOR RESIDUE GOL B 6394
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 12)
Info
All PROSITE Patterns/Profiles
1: THIOLASE_1 (A:85-103,B:85-103,C:85-103,D:85-10...)
2: THIOLASE_2 (A:338-354,B:338-354,C:338-354,D:33...)
3: THIOLASE_3 (A:373-386,B:373-386,C:373-386,D:37...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOLASE_1
PS00098
Thiolases acyl-enzyme intermediate signature.
THIL_ZOORA
85-103
4
A:85-103
B:85-103
C:85-103
D:85-103
2
THIOLASE_2
PS00737
Thiolases signature 2.
THIL_ZOORA
338-354
4
A:338-354
B:338-354
C:338-354
D:338-354
3
THIOLASE_3
PS00099
Thiolases active site.
THIL_ZOORA
373-386
4
A:373-386
B:373-386
C:373-386
D:373-386
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1m4sa1 (A:1-268)
1b: SCOP_d1m4sa2 (A:269-392)
1c: SCOP_d1m4sb1 (B:1-268)
1d: SCOP_d1m4sb2 (B:269-392)
1e: SCOP_d1m4sc1 (C:1-268)
1f: SCOP_d1m4sc2 (C:269-392)
1g: SCOP_d1m4sd1 (D:1-268)
1h: SCOP_d1m4sd2 (D:269-392)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thiolase-like
(231)
Superfamily
:
Thiolase-like
(231)
Family
:
Thiolase-related
(67)
Protein domain
:
Biosynthetic thiolase
(16)
Zoogloea ramigera [TaxId: 350]
(16)
1a
d1m4sa1
A:1-268
1b
d1m4sa2
A:269-392
1c
d1m4sb1
B:1-268
1d
d1m4sb2
B:269-392
1e
d1m4sc1
C:1-268
1f
d1m4sc2
C:269-392
1g
d1m4sd1
D:1-268
1h
d1m4sd2
D:269-392
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1m4sA01 (A:4-124,A:194-275)
1b: CATH_1m4sB01 (B:4-124,B:194-275)
1c: CATH_1m4sC01 (C:4-124,C:194-275)
1d: CATH_1m4sD01 (D:4-124,D:194-275)
1e: CATH_1m4sA02 (A:152-193,A:276-389)
1f: CATH_1m4sB02 (B:152-193,B:276-389)
1g: CATH_1m4sC02 (C:152-193,C:276-389)
1h: CATH_1m4sD02 (D:152-193,D:276-389)
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Homologous Superfamilies
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Peroxisomal Thiolase; Chain A, domain 1
(130)
Homologous Superfamily
:
[code=3.40.47.10, no name defined]
(130)
Zoogloea ramigera. Organism_taxid: 350.
(19)
1a
1m4sA01
A:4-124,A:194-275
1b
1m4sB01
B:4-124,B:194-275
1c
1m4sC01
C:4-124,C:194-275
1d
1m4sD01
D:4-124,D:194-275
1e
1m4sA02
A:152-193,A:276-389
1f
1m4sB02
B:152-193,B:276-389
1g
1m4sC02
C:152-193,C:276-389
1h
1m4sD02
D:152-193,D:276-389
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_Thiolase_C_1m4sD01 (D:269-391)
1b: PFAM_Thiolase_C_1m4sD02 (D:269-391)
1c: PFAM_Thiolase_C_1m4sD03 (D:269-391)
1d: PFAM_Thiolase_C_1m4sD04 (D:269-391)
2a: PFAM_Thiolase_N_1m4sD05 (D:11-262)
2b: PFAM_Thiolase_N_1m4sD06 (D:11-262)
2c: PFAM_Thiolase_N_1m4sD07 (D:11-262)
2d: PFAM_Thiolase_N_1m4sD08 (D:11-262)
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Families
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)
Organisms
(
)
(
)
Clan
:
Thiolase
(72)
Family
:
Thiolase_C
(23)
Zoogloea ramigera
(15)
1a
Thiolase_C-1m4sD01
D:269-391
1b
Thiolase_C-1m4sD02
D:269-391
1c
Thiolase_C-1m4sD03
D:269-391
1d
Thiolase_C-1m4sD04
D:269-391
Family
:
Thiolase_N
(23)
Zoogloea ramigera
(15)
2a
Thiolase_N-1m4sD05
D:11-262
2b
Thiolase_N-1m4sD06
D:11-262
2c
Thiolase_N-1m4sD07
D:11-262
2d
Thiolase_N-1m4sD08
D:11-262
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Asym.Unit (258 KB)
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