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1M3X
Asym. Unit
Info
Asym.Unit (160 KB)
Biol.Unit 1 (150 KB)
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(1)
Title
:
PHOTOSYNTHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES
Authors
:
A. Camara-Artigas, D. Brune, J. P. Allen
Date
:
01 Jul 02 (Deposition) - 28 Aug 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.55
Chains
:
Asym. Unit : H,L,M
Biol. Unit 1: H,L,M (1x)
Keywords
:
Alpha Helix, Membrane Protein, Photosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Camara-Artigas, D. Brune, J. P. Allen
Interactions Between Lipids And Bacterial Reaction Centers Determined By Protein Crystallography.
Proc. Natl. Acad. Sci. Usa V. 99 11055 2002
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(9, 14)
Info
All Hetero Components
1a: BACTERIOCHLOROPHYLL A (BCLa)
1b: BACTERIOCHLOROPHYLL A (BCLb)
1c: BACTERIOCHLOROPHYLL A (BCLc)
1d: BACTERIOCHLOROPHYLL A (BCLd)
2a: BACTERIOPHEOPHYTIN A (BPHa)
2b: BACTERIOPHEOPHYTIN A (BPHb)
3a: CARDIOLIPIN (CDLa)
4a: CHLORIDE ION (CLa)
5a: FE (III) ION (FEa)
6a: NONADEC-10-ENOIC ACID 2-[3,4-DIHYD... (GGDa)
7a: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHO... (PC1a)
8a: SPHEROIDENE (SPOa)
9a: UBIQUINONE-10 (U10a)
9b: UBIQUINONE-10 (U10b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BCL
4
Ligand/Ion
BACTERIOCHLOROPHYLL A
2
BPH
2
Ligand/Ion
BACTERIOPHEOPHYTIN A
3
CDL
1
Ligand/Ion
CARDIOLIPIN
4
CL
1
Ligand/Ion
CHLORIDE ION
5
FE
1
Ligand/Ion
FE (III) ION
6
GGD
1
Ligand/Ion
NONADEC-10-ENOIC ACID 2-[3,4-DIHYDROXY-6-HYDROXYMETHYL-5-(3,4,5-TRIHYDROXY-6-HYDROXYMETHYL-TETRAHYDRO-PYRAN-2-YLOXY)-TETRAHYDRO-PYRAN-2-YLOXY]-1-OCTADEC-9-ENOYLOXYMETHYL-ETHYL ESTER
7
PC1
1
Ligand/Ion
1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
8
SPO
1
Ligand/Ion
SPHEROIDENE
9
U10
2
Ligand/Ion
UBIQUINONE-10
[
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]
Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS L:190 , HIS L:230 , HIS M:219 , GLU M:234 , HIS M:266
BINDING SITE FOR RESIDUE FE M 856
02
AC2
SOFTWARE
LYS L:82
BINDING SITE FOR RESIDUE CL M 2000
03
AC3
SOFTWARE
HIS L:168 , MET L:174 , ILE L:177 , SER L:178 , THR L:182 , BCL L:851 , PC1 L:901 , HOH L:1007 , TRP M:157 , LEU M:160 , ILE M:179 , HIS M:182 , LEU M:183 , THR M:186 , BCL M:852 , BPH M:854 , SPO M:859
BINDING SITE FOR RESIDUE BCL L 850
04
AC4
SOFTWARE
PHE L:97 , ALA L:124 , LEU L:131 , VAL L:157 , ASN L:166 , HIS L:168 , HIS L:173 , ILE L:177 , PHE L:180 , SER L:244 , CYS L:247 , MET L:248 , BCL L:850 , BCL L:853 , BCL M:852
BINDING SITE FOR RESIDUE BCL L 851
05
AC5
SOFTWARE
VAL L:157 , TYR L:162 , PHE L:181 , BCL L:850 , BCL L:851 , BCL L:853 , MET M:122 , ALA M:153 , LEU M:156 , TRP M:157 , THR M:186 , ASN M:187 , PHE M:189 , SER M:190 , LEU M:196 , PHE M:197 , HIS M:202 , SER M:205 , ILE M:206 , TYR M:210 , GLY M:280 , ILE M:284 , BPH M:854
BINDING SITE FOR RESIDUE BCL M 852
06
AC6
SOFTWARE
TYR L:128 , LEU L:131 , PHE L:146 , HIS L:153 , LEU L:154 , BCL L:851 , BPH L:855 , PHE M:197 , GLY M:203 , ILE M:206 , ALA M:207 , TYR M:210 , LEU M:214 , BCL M:852 , GGD M:902
BINDING SITE FOR RESIDUE BCL L 853
07
AC7
SOFTWARE
PHE L:181 , ALA L:184 , BCL L:850 , PC1 L:901 , SER M:59 , LEU M:64 , PHE M:67 , ALA M:125 , TRP M:129 , THR M:146 , ALA M:149 , PHE M:150 , ALA M:153 , ALA M:273 , THR M:277 , BCL M:852
BINDING SITE FOR RESIDUE BPH M 854
08
AC8
SOFTWARE
ILE L:46 , TRP L:100 , GLU L:104 , ALA L:120 , PHE L:121 , TYR L:148 , HIS L:153 , SER L:237 , LEU L:238 , VAL L:241 , BCL L:853 , TYR M:210 , ALA M:213 , LEU M:214 , TRP M:252 , MET M:256
BINDING SITE FOR RESIDUE BPH L 855
09
AC9
SOFTWARE
GLY L:35 , THR L:38 , TRP L:100 , MET M:218 , HIS M:219 , THR M:222 , ALA M:249 , TRP M:252 , MET M:256 , PHE M:258 , ASN M:259 , ALA M:260 , THR M:261 , MET M:262 , ILE M:265 , TRP M:268 , MET M:272 , GGD M:902
BINDING SITE FOR RESIDUE U10 M 857
10
BC1
SOFTWARE
LEU L:189 , PHE L:216 , TYR L:222 , SER L:223 , ILE L:224 , ILE L:229 , PC1 L:901 , HOH L:1163
BINDING SITE FOR RESIDUE U10 L 858
11
BC2
SOFTWARE
BCL L:850 , PHE M:67 , ILE M:70 , GLY M:71 , TRP M:75 , TRP M:115 , SER M:119 , TRP M:157 , GLY M:161 , ILE M:179 , HIS M:182
BINDING SITE FOR RESIDUE SPO M 859
12
BC3
SOFTWARE
TYR H:30 , HOH H:1160 , ASN L:199 , GLY M:143 , LYS M:144 , HIS M:145 , TRP M:148 , TRP M:155 , ARG M:267 , TRP M:271 , HOH M:1139
BINDING SITE FOR RESIDUE CDL M 900
13
BC4
SOFTWARE
VAL L:220 , TYR L:222 , LEU L:235 , BCL L:850 , U10 L:858 , TRP M:129 , BPH M:854
BINDING SITE FOR RESIDUE PC1 L 901
14
BC5
SOFTWARE
TRP H:21 , LEU H:24 , GLN H:32 , TYR H:40 , LEU H:42 , BCL L:853 , ALA M:207 , PHE M:208 , ARG M:253 , MET M:256 , GLY M:257 , PHE M:258 , TRP M:268 , LEU M:275 , U10 M:857
BINDING SITE FOR RESIDUE GGD M 902
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: REACTION_CENTER (L:166-192,L:166-192,M:195-221,M:19...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
REACTION_CENTER
PS00244
Photosynthetic reaction center proteins signature.
RCEL_RHOS4
167-193
1
L:166-192
RCEL_RHOSH
167-193
1
L:166-192
RCEM_RHOS4
196-222
1
M:195-221
RCEM_RHOSH
196-222
1
M:195-221
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 4)
Info
All SCOP Domains
1a: SCOP_d1m3xh1 (H:36-248)
2a: SCOP_d1m3xl_ (L:)
3a: SCOP_d1m3xm_ (M:)
4a: SCOP_d1m3xh2 (H:11-35)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
PRC-barrel domain
(113)
Superfamily
:
PRC-barrel domain
(113)
Family
:
Photosynthetic reaction centre, H-chain, cytoplasmic domain
(108)
Protein domain
:
Photosynthetic reaction centre
(98)
Rhodobacter sphaeroides [TaxId: 1063]
(82)
1a
d1m3xh1
H:36-248
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Bacterial photosystem II reaction centre, L and M subunits
(187)
Superfamily
:
Bacterial photosystem II reaction centre, L and M subunits
(187)
Family
:
Bacterial photosystem II reaction centre, L and M subunits
(187)
Protein domain
:
L (light) subunit
(70)
Rhodobacter sphaeroides [TaxId: 1063]
(59)
2a
d1m3xl_
L:
Protein domain
:
M (medium) subunit
(70)
Rhodobacter sphaeroides [TaxId: 1063]
(59)
3a
d1m3xm_
M:
Fold
:
Single transmembrane helix
(568)
Superfamily
:
Photosystem II reaction centre subunit H, transmembrane region
(108)
Family
:
Photosystem II reaction centre subunit H, transmembrane region
(98)
Protein domain
:
Photosystem II reaction centre subunit H, transmembrane region
(98)
Rhodobacter sphaeroides [TaxId: 1063]
(82)
4a
d1m3xh2
H:11-35
[
close SCOP info
]
CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1m3xH02 (H:117-248)
2a: CATH_1m3xH01 (H:12-116)
3a: CATH_1m3xM01 (M:1-143)
3b: CATH_1m3xL01 (L:1-163)
3c: CATH_1m3xL02 (L:164-263)
3d: CATH_1m3xM02 (M:144-302)
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Photosynthetic Reaction Center; Chain H, domain 2
(93)
Homologous Superfamily
:
Photosynthetic Reaction Center, subunit H, domain 2
(93)
Rhodobacter sphaeroides. Organism_taxid: 1063.
(10)
1a
1m3xH02
H:117-248
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Photosynthetic Reaction Center; Chain H, domain 1
(93)
Homologous Superfamily
:
Photosynthetic Reaction Center, subunit H, domain 1
(93)
Rhodobacter sphaeroides. Organism_taxid: 1063.
(10)
2a
1m3xH01
H:12-116
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Photosynthetic Reaction Center, subunit M; domain 1
(93)
Homologous Superfamily
:
Membrane spanning alpha-helix pairs
(93)
Rhodobacter sphaeroides. Organism_taxid: 1063.
(10)
3a
1m3xM01
M:1-143
3b
1m3xL01
L:1-163
3c
1m3xL02
L:164-263
3d
1m3xM02
M:144-302
[
close CATH info
]
Pfam Domains
(3, 4)
Info
all PFAM domains
1a: PFAM_PRC_1m3xH01 (H:141-212)
2a: PFAM_PRCH_1m3xH02 (H:11-137)
3a: PFAM_Photo_RC_1m3xL01 (L:29-272)
3b: PFAM_Photo_RC_1m3xM01 (M:50-302)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
PRC-barrel
(43)
Family
:
PRC
(42)
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
(39)
1a
PRC-1m3xH01
H:141-212
Clan
:
no clan defined [family: PRCH]
(40)
Family
:
PRCH
(40)
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
(39)
2a
PRCH-1m3xH02
H:11-137
Clan
:
no clan defined [family: Photo_RC]
(43)
Family
:
Photo_RC
(43)
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
(39)
3a
Photo_RC-1m3xL01
L:29-272
3b
Photo_RC-1m3xM01
M:50-302
[
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]
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Protein & NOT Site
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Asymmetric Unit 1
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