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1M3U
Asym. Unit
Info
Asym.Unit (466 KB)
Biol.Unit 1 (454 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF KETOPANTOATE HYDROXYMETHYLTRANSFERASE COMPLEXED THE PRODUCT KETOPANTOATE
Authors
:
F. Von Delft, T. Inoue, S. A. Saldanha, H. H. Ottenhof, V. Dhanaraj, M. W C. Abell, A. G. Smith, T. L. Blundell
Date
:
30 Jun 02 (Deposition) - 22 Jul 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J (1x)
Keywords
:
Beta-Alpha-Barrel, Tim-Barrel, Ketopantoate, Selenomethionine Mad, Decamer, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Von Delft, T. Inoue, S. A. Saldanha, H. H. Ottenhof, F. Schmitzberger, L. M. Birch, V. Dhanaraj, M. Witty, A. G. Smith, T. L. Blundell, C. Abell
Structure Of E. Coli Ketopantoate Hydroxymethyl Transferase Complexed With Ketopantoate And Mg(2+), Solved By Locating 160 Selenomethionine Sites.
Structure V. 11 985 2003
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 20)
Info
All Hetero Components
1a: KETOPANTOATE (KPLa)
1b: KETOPANTOATE (KPLb)
1c: KETOPANTOATE (KPLc)
1d: KETOPANTOATE (KPLd)
1e: KETOPANTOATE (KPLe)
1f: KETOPANTOATE (KPLf)
1g: KETOPANTOATE (KPLg)
1h: KETOPANTOATE (KPLh)
1i: KETOPANTOATE (KPLi)
1j: KETOPANTOATE (KPLj)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
2g: MAGNESIUM ION (MGg)
2h: MAGNESIUM ION (MGh)
2i: MAGNESIUM ION (MGi)
2j: MAGNESIUM ION (MGj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
KPL
10
Ligand/Ion
KETOPANTOATE
2
MG
10
Ligand/Ion
MAGNESIUM ION
[
close Hetero Component info
]
Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:45 , ASP A:84 , LYS A:112 , KPL A:265 , HOH A:267 , HOH A:268
BINDING SITE FOR RESIDUE MG A 266
02
AC2
SOFTWARE
ASP B:45 , ASP B:84 , LYS B:112 , KPL B:265 , HOH B:267 , HOH B:268
BINDING SITE FOR RESIDUE MG B 266
03
AC3
SOFTWARE
ASP C:45 , ASP C:84 , LYS C:112 , KPL C:265 , HOH C:267 , HOH C:268
BINDING SITE FOR RESIDUE MG C 266
04
AC4
SOFTWARE
ASP D:45 , ASP D:84 , LYS D:112 , KPL D:265 , HOH D:267 , HOH D:268
BINDING SITE FOR RESIDUE MG D 266
05
AC5
SOFTWARE
ASP E:45 , ASP E:84 , LYS E:112 , KPL E:265 , HOH E:267 , HOH E:268
BINDING SITE FOR RESIDUE MG E 266
06
AC6
SOFTWARE
ASP F:45 , ASP F:84 , LYS F:112 , KPL F:265 , HOH F:267 , HOH F:268
BINDING SITE FOR RESIDUE MG F 266
07
AC7
SOFTWARE
ASP G:45 , ASP G:84 , LYS G:112 , KPL G:265 , HOH G:267 , HOH G:268
BINDING SITE FOR RESIDUE MG G 266
08
AC8
SOFTWARE
ASP H:45 , ASP H:84 , LYS H:112 , KPL H:265 , HOH H:267 , HOH H:268
BINDING SITE FOR RESIDUE MG H 266
09
AC9
SOFTWARE
ASP I:45 , ASP I:84 , LYS I:112 , KPL I:265 , HOH I:267 , HOH I:268
BINDING SITE FOR RESIDUE MG I 266
10
BC1
SOFTWARE
ASP J:45 , ASP J:84 , LYS J:112 , KPL J:265 , HOH J:267 , HOH J:268
BINDING SITE FOR RESIDUE MG J 266
11
BC2
SOFTWARE
THR A:23 , LEU A:42 , GLY A:44 , ASP A:45 , SER A:46 , ASP A:84 , LYS A:112 , HIS A:136 , PRO A:141 , GLU A:181 , VAL A:214 , MG A:266 , HOH A:268 , HOH A:272 , HOH A:488
BINDING SITE FOR RESIDUE KPL A 265
12
BC3
SOFTWARE
THR B:23 , LEU B:42 , GLY B:44 , ASP B:45 , SER B:46 , ASP B:84 , LYS B:112 , HIS B:136 , PRO B:141 , GLU B:181 , VAL B:214 , MG B:266 , HOH B:268 , HOH B:272 , HOH B:452
BINDING SITE FOR RESIDUE KPL B 265
13
BC4
SOFTWARE
THR C:23 , LEU C:42 , GLY C:44 , ASP C:45 , SER C:46 , ASP C:84 , LYS C:112 , HIS C:136 , GLU C:181 , ILE C:212 , VAL C:214 , MG C:266 , HOH C:268 , HOH C:271 , HOH C:272 , HOH C:459
BINDING SITE FOR RESIDUE KPL C 265
14
BC5
SOFTWARE
THR D:23 , LEU D:42 , GLY D:44 , ASP D:45 , SER D:46 , ASP D:84 , LYS D:112 , HIS D:136 , PRO D:141 , GLU D:181 , VAL D:214 , MG D:266 , HOH D:268 , HOH D:472
BINDING SITE FOR RESIDUE KPL D 265
15
BC6
SOFTWARE
THR E:23 , LEU E:42 , GLY E:44 , ASP E:45 , SER E:46 , ASP E:84 , LYS E:112 , HIS E:136 , GLU E:181 , VAL E:214 , MG E:266 , HOH E:268 , HOH E:271
BINDING SITE FOR RESIDUE KPL E 265
16
BC7
SOFTWARE
THR F:23 , LEU F:42 , GLY F:44 , ASP F:45 , SER F:46 , ASP F:84 , LYS F:112 , HIS F:136 , PRO F:141 , GLU F:181 , VAL F:214 , MG F:266 , HOH F:268 , HOH F:271
BINDING SITE FOR RESIDUE KPL F 265
17
BC8
SOFTWARE
THR G:23 , LEU G:42 , GLY G:44 , ASP G:45 , SER G:46 , ASP G:84 , LYS G:112 , HIS G:136 , GLU G:181 , ILE G:212 , VAL G:214 , MG G:266 , HOH G:268 , HOH G:271 , HOH G:386
BINDING SITE FOR RESIDUE KPL G 265
18
BC9
SOFTWARE
THR H:23 , LEU H:42 , GLY H:44 , ASP H:45 , SER H:46 , ASP H:84 , LYS H:112 , HIS H:136 , PRO H:141 , GLU H:181 , VAL H:214 , MG H:266 , HOH H:268
BINDING SITE FOR RESIDUE KPL H 265
19
CC1
SOFTWARE
THR I:23 , LEU I:42 , GLY I:44 , ASP I:45 , SER I:46 , ASP I:84 , LYS I:112 , HIS I:136 , PRO I:141 , GLU I:181 , ILE I:212 , VAL I:214 , MG I:266 , HOH I:268 , HOH I:271
BINDING SITE FOR RESIDUE KPL I 265
20
CC2
SOFTWARE
THR J:23 , GLY J:44 , ASP J:45 , SER J:46 , ASP J:84 , LYS J:112 , HIS J:136 , GLU J:181 , ILE J:212 , VAL J:214 , MG J:266 , HOH J:268
BINDING SITE FOR RESIDUE KPL J 265
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 10)
Info
All SCOP Domains
1a: SCOP_d1m3ua_ (A:)
1b: SCOP_d1m3ub_ (B:)
1c: SCOP_d1m3uc_ (C:)
1d: SCOP_d1m3ud_ (D:)
1e: SCOP_d1m3ue_ (E:)
1f: SCOP_d1m3uf_ (F:)
1g: SCOP_d1m3ug_ (G:)
1h: SCOP_d1m3uh_ (H:)
1i: SCOP_d1m3ui_ (I:)
1j: SCOP_d1m3uj_ (J:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Phosphoenolpyruvate/pyruvate domain
(92)
Family
:
Ketopantoate hydroxymethyltransferase PanB
(6)
Protein domain
:
Ketopantoate hydroxymethyltransferase PanB
(4)
Escherichia coli [TaxId: 562]
(1)
1a
d1m3ua_
A:
1b
d1m3ub_
B:
1c
d1m3uc_
C:
1d
d1m3ud_
D:
1e
d1m3ue_
E:
1f
d1m3uf_
F:
1g
d1m3ug_
G:
1h
d1m3uh_
H:
1i
d1m3ui_
I:
1j
d1m3uj_
J:
[
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]
CATH Domains
(1, 10)
Info
all CATH domains
1a: CATH_1m3uA00 (A:3-264)
1b: CATH_1m3uB00 (B:3-264)
1c: CATH_1m3uC00 (C:3-264)
1d: CATH_1m3uD00 (D:3-264)
1e: CATH_1m3uE00 (E:3-264)
1f: CATH_1m3uF00 (F:3-264)
1g: CATH_1m3uG00 (G:3-264)
1h: CATH_1m3uH00 (H:3-264)
1i: CATH_1m3uI00 (I:3-264)
1j: CATH_1m3uJ00 (J:3-264)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Phosphoenolpyruvate-binding domains
(67)
Escherichia coli. Organism_taxid: 562.
(5)
1a
1m3uA00
A:3-264
1b
1m3uB00
B:3-264
1c
1m3uC00
C:3-264
1d
1m3uD00
D:3-264
1e
1m3uE00
E:3-264
1f
1m3uF00
F:3-264
1g
1m3uG00
G:3-264
1h
1m3uH00
H:3-264
1i
1m3uI00
I:3-264
1j
1m3uJ00
J:3-264
[
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Pfam Domains
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