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1M35
Biol. Unit 2
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Asym.Unit (433 KB)
Biol.Unit 1 (286 KB)
Biol.Unit 2 (289 KB)
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(1)
Title
:
AMINOPEPTIDASE P FROM ESCHERICHIA COLI
Authors
:
S. C. Graham, M. Lee, H. C. Freeman, J. M. Guss
Date
:
27 Jun 02 (Deposition) - 06 May 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F (2x)
Keywords
:
Aminopeptidase, Proline Specific, Manganese Enzyme, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
S. C. Graham, M. Lee, H. C. Freeman, J. M. Guss
An Orthorhombic Form Of Escherichia Coli Aminopeptidase P At 2. 4 A Resolution.
Acta Crystallogr. , Sect. D V. 59 897 2003
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: MANGANESE (II) ION (MNa)
1b: MANGANESE (II) ION (MNb)
1c: MANGANESE (II) ION (MNc)
1d: MANGANESE (II) ION (MNd)
1e: MANGANESE (II) ION (MNe)
1f: MANGANESE (II) ION (MNf)
1g: MANGANESE (II) ION (MNg)
1h: MANGANESE (II) ION (MNh)
1i: MANGANESE (II) ION (MNi)
1j: MANGANESE (II) ION (MNj)
1k: MANGANESE (II) ION (MNk)
1l: MANGANESE (II) ION (MNl)
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Sites
(4, 4)
Info
All Sites
1: AC9 (SOFTWARE)
2: BC1 (SOFTWARE)
3: BC2 (SOFTWARE)
4: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC9
SOFTWARE
TYR E:229 , ASP E:260 , ASP E:271 , THR E:273 , GLU E:406 , HOH E:614 , HOH E:1309 , MN E:2010
BINDING SITE FOR RESIDUE MN E 2009
2
BC1
SOFTWARE
ASP E:271 , HIS E:354 , GLU E:383 , GLU E:406 , HOH E:1309 , HOH E:1610 , MN E:2009
BINDING SITE FOR RESIDUE MN E 2010
3
BC2
SOFTWARE
TYR F:229 , ASP F:260 , ASP F:271 , THR F:273 , GLU F:406 , HOH F:766 , HOH F:855 , MN F:2012
BINDING SITE FOR RESIDUE MN F 2011
4
BC3
SOFTWARE
ASP F:271 , HIS F:354 , GLU F:383 , GLU F:406 , HOH F:855 , MN F:2011
BINDING SITE FOR RESIDUE MN F 2012
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: PROLINE_PEPTIDASE (E:350-362,F:350-362)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROLINE_PEPTIDASE
PS00491
Aminopeptidase P and proline dipeptidase signature.
AMPP_ECOLI
351-363
4
-
-
-
-
E:350-362
F:350-362
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d1m35a2 (A:177-440)
1b: SCOP_d1m35b2 (B:177-440)
1c: SCOP_d1m35c2 (C:177-440)
1d: SCOP_d1m35d2 (D:177-440)
1e: SCOP_d1m35e2 (E:177-440)
1f: SCOP_d1m35f2 (F:177-440)
2a: SCOP_d1m35a1 (A:1-176)
2b: SCOP_d1m35b1 (B:1-176)
2c: SCOP_d1m35c1 (C:1-176)
2d: SCOP_d1m35d1 (D:1-176)
2e: SCOP_d1m35e1 (E:1-176)
2f: SCOP_d1m35f1 (F:1-176)
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)
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)
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)
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)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Creatinase/aminopeptidase
(103)
Superfamily
:
Creatinase/aminopeptidase
(103)
Family
:
Creatinase/aminopeptidase
(99)
Protein domain
:
Aminopeptidase P, C-terminal domain
(20)
Escherichia coli [TaxId: 562]
(19)
1a
d1m35a2
A:177-440
1b
d1m35b2
B:177-440
1c
d1m35c2
C:177-440
1d
d1m35d2
D:177-440
1e
d1m35e2
E:177-440
1f
d1m35f2
F:177-440
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Creatinase/prolidase N-terminal domain
(30)
Family
:
Creatinase/prolidase N-terminal domain
(29)
Protein domain
:
Aminopeptidase P
(20)
Escherichia coli [TaxId: 562]
(19)
2a
d1m35a1
A:1-176
2b
d1m35b1
B:1-176
2c
d1m35c1
C:1-176
2d
d1m35d1
D:1-176
2e
d1m35e1
E:1-176
2f
d1m35f1
F:1-176
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CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_1m35A01 (A:1-173)
1b: CATH_1m35B01 (B:1-173)
1c: CATH_1m35C01 (C:1-173)
1d: CATH_1m35D01 (D:1-173)
1e: CATH_1m35E01 (E:1-173)
1f: CATH_1m35F01 (F:1-173)
2a: CATH_1m35A02 (A:174-439)
2b: CATH_1m35B02 (B:174-439)
2c: CATH_1m35C02 (C:174-439)
2d: CATH_1m35D02 (D:174-439)
2e: CATH_1m35E02 (E:174-439)
2f: CATH_1m35F02 (F:174-439)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Creatine Amidinohydrolase; Chain A, domain 1
(35)
Homologous Superfamily
:
Creatine Amidinohydrolase, subunit A, domain 1
(35)
Escherichia coli. Organism_taxid: 562.
(6)
1a
1m35A01
A:1-173
1b
1m35B01
B:1-173
1c
1m35C01
C:1-173
1d
1m35D01
D:1-173
1e
1m35E01
E:1-173
1f
1m35F01
F:1-173
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Creatine Amidinohydrolase
(114)
Homologous Superfamily
:
Creatinase/methionine aminopeptidase superfamily
(114)
Escherichia coli. Organism_taxid: 562.
(23)
2a
1m35A02
A:174-439
2b
1m35B02
B:174-439
2c
1m35C02
C:174-439
2d
1m35D02
D:174-439
2e
1m35E02
E:174-439
2f
1m35F02
F:174-439
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Pfam Domains
(2, 12)
Info
all PFAM domains
1a: PFAM_AMP_N_1m35F01 (F:3-138)
1b: PFAM_AMP_N_1m35F02 (F:3-138)
1c: PFAM_AMP_N_1m35F03 (F:3-138)
1d: PFAM_AMP_N_1m35F04 (F:3-138)
1e: PFAM_AMP_N_1m35F05 (F:3-138)
1f: PFAM_AMP_N_1m35F06 (F:3-138)
2a: PFAM_Peptidase_M24_1m35F07 (F:182-413)
2b: PFAM_Peptidase_M24_1m35F08 (F:182-413)
2c: PFAM_Peptidase_M24_1m35F09 (F:182-413)
2d: PFAM_Peptidase_M24_1m35F10 (F:182-413)
2e: PFAM_Peptidase_M24_1m35F11 (F:182-413)
2f: PFAM_Peptidase_M24_1m35F12 (F:182-413)
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Clans
(
)
(
)
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)
(
)
Organisms
(
)
(
)
Clan
:
AMP_N-like
(22)
Family
:
AMP_N
(11)
Escherichia coli (strain K12)
(10)
1a
AMP_N-1m35F01
F:3-138
1b
AMP_N-1m35F02
F:3-138
1c
AMP_N-1m35F03
F:3-138
1d
AMP_N-1m35F04
F:3-138
1e
AMP_N-1m35F05
F:3-138
1f
AMP_N-1m35F06
F:3-138
Clan
:
no clan defined [family: Peptidase_M24]
(23)
Family
:
Peptidase_M24
(23)
Escherichia coli (strain K12)
(10)
2a
Peptidase_M24-1m35F07
F:182-413
2b
Peptidase_M24-1m35F08
F:182-413
2c
Peptidase_M24-1m35F09
F:182-413
2d
Peptidase_M24-1m35F10
F:182-413
2e
Peptidase_M24-1m35F11
F:182-413
2f
Peptidase_M24-1m35F12
F:182-413
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