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1M35
Asym. Unit
Info
Asym.Unit (433 KB)
Biol.Unit 1 (286 KB)
Biol.Unit 2 (289 KB)
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(1)
Title
:
AMINOPEPTIDASE P FROM ESCHERICHIA COLI
Authors
:
S. C. Graham, M. Lee, H. C. Freeman, J. M. Guss
Date
:
27 Jun 02 (Deposition) - 06 May 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F (2x)
Keywords
:
Aminopeptidase, Proline Specific, Manganese Enzyme, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. C. Graham, M. Lee, H. C. Freeman, J. M. Guss
An Orthorhombic Form Of Escherichia Coli Aminopeptidase P At 2. 4 A Resolution.
Acta Crystallogr. , Sect. D V. 59 897 2003
(for further references see the
PDB file header
)
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Hetero Components
(1, 12)
Info
All Hetero Components
1a: MANGANESE (II) ION (MNa)
1b: MANGANESE (II) ION (MNb)
1c: MANGANESE (II) ION (MNc)
1d: MANGANESE (II) ION (MNd)
1e: MANGANESE (II) ION (MNe)
1f: MANGANESE (II) ION (MNf)
1g: MANGANESE (II) ION (MNg)
1h: MANGANESE (II) ION (MNh)
1i: MANGANESE (II) ION (MNi)
1j: MANGANESE (II) ION (MNj)
1k: MANGANESE (II) ION (MNk)
1l: MANGANESE (II) ION (MNl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MN
12
Ligand/Ion
MANGANESE (II) ION
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:260 , ASP A:271 , THR A:273 , GLU A:406 , MN A:2002 , HOH A:2042 , HOH A:2150
BINDING SITE FOR RESIDUE MN A 2001
02
AC2
SOFTWARE
ASP A:271 , HIS A:354 , GLU A:383 , GLU A:406 , MN A:2001 , HOH A:2150
BINDING SITE FOR RESIDUE MN A 2002
03
AC3
SOFTWARE
ASP B:260 , ASP B:271 , THR B:273 , GLU B:406 , MN B:2004 , HOH B:2202 , HOH B:2203
BINDING SITE FOR RESIDUE MN B 2003
04
AC4
SOFTWARE
ASP B:271 , HIS B:354 , GLU B:383 , GLU B:406 , MN B:2003 , HOH B:2202
BINDING SITE FOR RESIDUE MN B 2004
05
AC5
SOFTWARE
TYR C:229 , ASP C:260 , ASP C:271 , THR C:273 , GLU C:406 , MN C:2006 , HOH C:2049 , HOH C:2171
BINDING SITE FOR RESIDUE MN C 2005
06
AC6
SOFTWARE
ASP C:271 , HIS C:354 , GLU C:383 , GLU C:406 , MN C:2005 , HOH C:2171
BINDING SITE FOR RESIDUE MN C 2006
07
AC7
SOFTWARE
ASP D:260 , ASP D:271 , THR D:273 , GLU D:406 , MN D:2008 , HOH D:2067 , HOH D:2226
BINDING SITE FOR RESIDUE MN D 2007
08
AC8
SOFTWARE
ASP D:271 , HIS D:354 , GLU D:383 , GLU D:406 , MN D:2007 , HOH D:2226
BINDING SITE FOR RESIDUE MN D 2008
09
AC9
SOFTWARE
TYR E:229 , ASP E:260 , ASP E:271 , THR E:273 , GLU E:406 , HOH E:614 , HOH E:1309 , MN E:2010
BINDING SITE FOR RESIDUE MN E 2009
10
BC1
SOFTWARE
ASP E:271 , HIS E:354 , GLU E:383 , GLU E:406 , HOH E:1309 , HOH E:1610 , MN E:2009
BINDING SITE FOR RESIDUE MN E 2010
11
BC2
SOFTWARE
TYR F:229 , ASP F:260 , ASP F:271 , THR F:273 , GLU F:406 , HOH F:766 , HOH F:855 , MN F:2012
BINDING SITE FOR RESIDUE MN F 2011
12
BC3
SOFTWARE
ASP F:271 , HIS F:354 , GLU F:383 , GLU F:406 , HOH F:855 , MN F:2011
BINDING SITE FOR RESIDUE MN F 2012
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: PROLINE_PEPTIDASE (A:350-362,B:350-362,C:350-362,D:35...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROLINE_PEPTIDASE
PS00491
Aminopeptidase P and proline dipeptidase signature.
AMPP_ECOLI
351-363
6
A:350-362
B:350-362
C:350-362
D:350-362
E:350-362
F:350-362
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d1m35a2 (A:177-440)
1b: SCOP_d1m35b2 (B:177-440)
1c: SCOP_d1m35c2 (C:177-440)
1d: SCOP_d1m35d2 (D:177-440)
1e: SCOP_d1m35e2 (E:177-440)
1f: SCOP_d1m35f2 (F:177-440)
2a: SCOP_d1m35a1 (A:1-176)
2b: SCOP_d1m35b1 (B:1-176)
2c: SCOP_d1m35c1 (C:1-176)
2d: SCOP_d1m35d1 (D:1-176)
2e: SCOP_d1m35e1 (E:1-176)
2f: SCOP_d1m35f1 (F:1-176)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Creatinase/aminopeptidase
(103)
Superfamily
:
Creatinase/aminopeptidase
(103)
Family
:
Creatinase/aminopeptidase
(99)
Protein domain
:
Aminopeptidase P, C-terminal domain
(20)
Escherichia coli [TaxId: 562]
(19)
1a
d1m35a2
A:177-440
1b
d1m35b2
B:177-440
1c
d1m35c2
C:177-440
1d
d1m35d2
D:177-440
1e
d1m35e2
E:177-440
1f
d1m35f2
F:177-440
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Creatinase/prolidase N-terminal domain
(30)
Family
:
Creatinase/prolidase N-terminal domain
(29)
Protein domain
:
Aminopeptidase P
(20)
Escherichia coli [TaxId: 562]
(19)
2a
d1m35a1
A:1-176
2b
d1m35b1
B:1-176
2c
d1m35c1
C:1-176
2d
d1m35d1
D:1-176
2e
d1m35e1
E:1-176
2f
d1m35f1
F:1-176
[
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]
CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_1m35A01 (A:1-173)
1b: CATH_1m35B01 (B:1-173)
1c: CATH_1m35C01 (C:1-173)
1d: CATH_1m35D01 (D:1-173)
1e: CATH_1m35E01 (E:1-173)
1f: CATH_1m35F01 (F:1-173)
2a: CATH_1m35A02 (A:174-439)
2b: CATH_1m35B02 (B:174-439)
2c: CATH_1m35C02 (C:174-439)
2d: CATH_1m35D02 (D:174-439)
2e: CATH_1m35E02 (E:174-439)
2f: CATH_1m35F02 (F:174-439)
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)
(
)
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)
Topologies
(
)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Creatine Amidinohydrolase; Chain A, domain 1
(35)
Homologous Superfamily
:
Creatine Amidinohydrolase, subunit A, domain 1
(35)
Escherichia coli. Organism_taxid: 562.
(6)
1a
1m35A01
A:1-173
1b
1m35B01
B:1-173
1c
1m35C01
C:1-173
1d
1m35D01
D:1-173
1e
1m35E01
E:1-173
1f
1m35F01
F:1-173
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Creatine Amidinohydrolase
(114)
Homologous Superfamily
:
Creatinase/methionine aminopeptidase superfamily
(114)
Escherichia coli. Organism_taxid: 562.
(23)
2a
1m35A02
A:174-439
2b
1m35B02
B:174-439
2c
1m35C02
C:174-439
2d
1m35D02
D:174-439
2e
1m35E02
E:174-439
2f
1m35F02
F:174-439
[
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]
Pfam Domains
(2, 12)
Info
all PFAM domains
1a: PFAM_AMP_N_1m35F01 (F:3-138)
1b: PFAM_AMP_N_1m35F02 (F:3-138)
1c: PFAM_AMP_N_1m35F03 (F:3-138)
1d: PFAM_AMP_N_1m35F04 (F:3-138)
1e: PFAM_AMP_N_1m35F05 (F:3-138)
1f: PFAM_AMP_N_1m35F06 (F:3-138)
2a: PFAM_Peptidase_M24_1m35F07 (F:182-413)
2b: PFAM_Peptidase_M24_1m35F08 (F:182-413)
2c: PFAM_Peptidase_M24_1m35F09 (F:182-413)
2d: PFAM_Peptidase_M24_1m35F10 (F:182-413)
2e: PFAM_Peptidase_M24_1m35F11 (F:182-413)
2f: PFAM_Peptidase_M24_1m35F12 (F:182-413)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
AMP_N-like
(22)
Family
:
AMP_N
(11)
Escherichia coli (strain K12)
(10)
1a
AMP_N-1m35F01
F:3-138
1b
AMP_N-1m35F02
F:3-138
1c
AMP_N-1m35F03
F:3-138
1d
AMP_N-1m35F04
F:3-138
1e
AMP_N-1m35F05
F:3-138
1f
AMP_N-1m35F06
F:3-138
Clan
:
no clan defined [family: Peptidase_M24]
(23)
Family
:
Peptidase_M24
(23)
Escherichia coli (strain K12)
(10)
2a
Peptidase_M24-1m35F07
F:182-413
2b
Peptidase_M24-1m35F08
F:182-413
2c
Peptidase_M24-1m35F09
F:182-413
2d
Peptidase_M24-1m35F10
F:182-413
2e
Peptidase_M24-1m35F11
F:182-413
2f
Peptidase_M24-1m35F12
F:182-413
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Asym.Unit (433 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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