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1M2X
Asym. Unit
Info
Asym.Unit (168 KB)
Biol.Unit 1 (45 KB)
Biol.Unit 2 (44 KB)
Biol.Unit 3 (43 KB)
Biol.Unit 4 (44 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE BLAB OF CHRYSEOBACTERIUM MENINGOSEPTICUM IN COMPLEX WITH THE INHIBITOR D-CAPTOPRIL
Authors
:
I. Garcia-Saez, O. Dideberg
Date
:
26 Jun 02 (Deposition) - 29 Jul 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Alpha-Beta/Beta-Alpha Fold. , Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Garcia-Saez, J. Hopkins, C. Papamicael, N. Franceschini, G. Amicosante, G. M. Rossolini, M. Galleni, J. M. Frere, O. Dideberg
The 1. 5 A Structure Of Chryseobacterium Meningosepticum Zn-Beta-Lactamase In Complex With The Inhibitor, D-Captopri
J. Biol. Chem. V. 278 23868 2003
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Hetero Components
(4, 21)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
2a: 1-(3-MERCAPTO-2-METHYL-PROPIONYL)-... (MCOa)
2b: 1-(3-MERCAPTO-2-METHYL-PROPIONYL)-... (MCOb)
2c: 1-(3-MERCAPTO-2-METHYL-PROPIONYL)-... (MCOc)
2d: 1-(3-MERCAPTO-2-METHYL-PROPIONYL)-... (MCOd)
3a: SODIUM ION (NAa)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
4g: ZINC ION (ZNg)
4h: ZINC ION (ZNh)
4i: ZINC ION (ZNi)
4j: ZINC ION (ZNj)
4k: ZINC ION (ZNk)
4l: ZINC ION (ZNl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
4
Ligand/Ion
GLYCEROL
2
MCO
4
Ligand/Ion
1-(3-MERCAPTO-2-METHYL-PROPIONYL)-PYRROLIDINE-2-CARBOXYLIC ACID
3
NA
1
Ligand/Ion
SODIUM ION
4
ZN
12
Ligand/Ion
ZINC ION
[
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Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:150 , LYS A:167 , ARG A:169 , LYS D:148
BINDING SITE FOR RESIDUE NA A 302
02
AC2
SOFTWARE
HIS A:116 , HIS A:118 , HIS A:196 , MCO A:811 , ZN A:902
BINDING SITE FOR RESIDUE ZN A 901
03
AC3
SOFTWARE
ASP A:120 , CYS A:221 , HIS A:263 , MCO A:811 , ZN A:901
BINDING SITE FOR RESIDUE ZN A 902
04
AC4
SOFTWARE
HIS B:116 , HIS B:118 , HIS B:196 , MCO B:812 , ZN B:902
BINDING SITE FOR RESIDUE ZN B 901
05
AC5
SOFTWARE
ASP B:120 , CYS B:221 , HIS B:263 , MCO B:812 , ZN B:901
BINDING SITE FOR RESIDUE ZN B 902
06
AC6
SOFTWARE
HIS C:116 , HIS C:118 , HIS C:196 , MCO C:813 , ZN C:902
BINDING SITE FOR RESIDUE ZN C 901
07
AC7
SOFTWARE
ASP C:120 , CYS C:221 , HIS C:263 , MCO C:813 , ZN C:901
BINDING SITE FOR RESIDUE ZN C 902
08
AC8
SOFTWARE
HIS D:116 , HIS D:118 , HIS D:196 , MCO D:814 , ZN D:902
BINDING SITE FOR RESIDUE ZN D 901
09
AC9
SOFTWARE
ASP D:120 , CYS D:221 , HIS D:263 , MCO D:814 , ZN D:901
BINDING SITE FOR RESIDUE ZN D 902
10
BC1
SOFTWARE
HIS A:285 , ASP A:288 , HOH A:1084 , HOH A:1085 , HOH A:1086
BINDING SITE FOR RESIDUE ZN A 900
11
BC2
SOFTWARE
HOH A:1087 , HIS B:285 , ASP B:288 , HOH B:1070 , HOH B:1071
BINDING SITE FOR RESIDUE ZN B 900
12
BC3
SOFTWARE
HIS C:285 , ASP C:288 , HOH C:1074 , HOH C:1075 , HOH D:1089
BINDING SITE FOR RESIDUE ZN C 900
13
BC4
SOFTWARE
HIS D:285 , ASP D:288 , HOH D:1090 , HOH D:1091 , HOH D:1092
BINDING SITE FOR RESIDUE ZN D 900
14
BC5
SOFTWARE
TYR A:100 , HIS A:118 , ASP A:119 , ASP A:120 , LYS A:167 , HIS A:196 , TYR A:233 , ZN A:901 , ZN A:902 , HOH A:985 , HOH A:996 , HOH A:1073
BINDING SITE FOR RESIDUE MCO A 811
15
BC6
SOFTWARE
HIS B:118 , ASP B:119 , ASP B:120 , LYS B:167 , HIS B:196 , TYR B:233 , ZN B:901 , ZN B:902 , HOH B:1012 , HOH B:1049 , HOH B:1069 , TYR D:100
BINDING SITE FOR RESIDUE MCO B 812
16
BC7
SOFTWARE
TYR B:100 , HIS C:118 , ASP C:119 , ASP C:120 , LYS C:167 , HIS C:196 , TYR C:233 , ZN C:901 , ZN C:902 , HOH C:1010 , HOH C:1048
BINDING SITE FOR RESIDUE MCO C 813
17
BC8
SOFTWARE
TYR C:100 , HIS D:118 , ASP D:119 , ASP D:120 , LYS D:167 , HIS D:196 , TYR D:233 , ZN D:901 , ZN D:902 , HOH D:977 , HOH D:1034
BINDING SITE FOR RESIDUE MCO D 814
18
BC9
SOFTWARE
GLY A:235 , GLU A:236 , ALA A:237 , TYR A:238 , HOH A:950 , HOH A:1023 , GLN B:171
BINDING SITE FOR RESIDUE GOL A 801
19
CC1
SOFTWARE
GLY B:235 , GLU B:236 , ALA B:237 , HOH B:933 , HOH B:1025
BINDING SITE FOR RESIDUE GOL B 802
20
CC2
SOFTWARE
GLN C:171 , GLY C:235 , GLU C:236 , ALA C:237 , HOH C:970 , HOH C:1006
BINDING SITE FOR RESIDUE GOL C 803
21
CC3
SOFTWARE
GLN A:171 , GLY D:235 , GLU D:236 , ALA D:237 , TYR D:238 , HOH D:1030
BINDING SITE FOR RESIDUE GOL D 804
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: BETA_LACTAMASE_B_1 (A:113-133,B:113-133,C:113-133,D:11...)
2: BETA_LACTAMASE_B_2 (A:209-224,B:209-224,C:209-224,D:20...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BETA_LACTAMASE_B_1
PS00743
Beta-lactamases class B signature 1.
BLAB1_ELIME
95-114
4
A:113-133
B:113-133
C:113-133
D:113-133
2
BETA_LACTAMASE_B_2
PS00744
Beta-lactamases class B signature 2.
BLAB1_ELIME
171-183
4
A:209-224
B:209-224
C:209-224
D:209-224
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1m2xa_ (A:)
1b: SCOP_d1m2xb_ (B:)
1c: SCOP_d1m2xc_ (C:)
1d: SCOP_d1m2xd_ (D:)
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Folds
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(
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Superfamilies
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(
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Families
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Metallo-hydrolase/oxidoreductase
(184)
Superfamily
:
Metallo-hydrolase/oxidoreductase
(184)
Family
:
Zn metallo-beta-lactamase
(93)
Protein domain
:
Zn metallo-beta-lactamase
(63)
Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]
(1)
1a
d1m2xa_
A:
1b
d1m2xb_
B:
1c
d1m2xc_
C:
1d
d1m2xd_
D:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1m2xA00 (A:41-297)
1b: CATH_1m2xB00 (B:41-297)
1c: CATH_1m2xD00 (D:41-297)
1d: CATH_1m2xC00 (C:41-295)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Metallo-beta-lactamase; Chain A
(92)
Homologous Superfamily
:
Metallo-beta-lactamase, chain A
(92)
Elizabethkingia meningoseptica. Organism_taxid: 238.
(1)
1a
1m2xA00
A:41-297
1b
1m2xB00
B:41-297
1c
1m2xD00
D:41-297
1d
1m2xC00
C:41-295
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain D
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