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1M2W
Biol. Unit 1
Info
Asym.Unit (177 KB)
Biol.Unit 1 (88 KB)
Biol.Unit 2 (87 KB)
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(1)
Title
:
PSEUDOMONAS FLUORESCENS MANNITOL 2-DEHYDROGENASE TERNARY COMPLEX WITH NAD AND D-MANNITOL
Authors
:
K. L. Kavanagh, M. Klimacek, B. Nidetzky, D. K. Wilson
Date
:
25 Jun 02 (Deposition) - 15 Nov 02 (Release) - 16 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Rossmann Fold, Di-Nucleotide Binding Motif, Long-Chain Dehydrogenase, Polyol Dehydrogenase, Secondary Alcohol Dehydrogenase, Oxidoreductase
(Keyword Search:
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Reference
:
K. L. Kavanagh, M. Klimacek, B. Nidetzky, D. K. Wilson
Crystal Structure Of Pseudomonas Fluorescens Mannitol 2-Dehydrogenase Binary And Ternary Complexes. Specificity And Catalytic Mechanism
J. Biol. Chem. V. 277 43433 2002
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Hetero Components
(3, 13)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
1s: SELENOMETHIONINE (MSEs)
1t: SELENOMETHIONINE (MSEt)
1u: SELENOMETHIONINE (MSEu)
1v: SELENOMETHIONINE (MSEv)
2a: D-MANNITOL (MTLa)
2b: D-MANNITOL (MTLb)
3a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
3b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
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No.
Name
Count
Type
Full Name
1
MSE
11
Mod. Amino Acid
SELENOMETHIONINE
2
MTL
1
Ligand/Ion
D-MANNITOL
3
NAD
1
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:33 , VAL A:34 , GLY A:35 , GLY A:36 , PHE A:37 , ARG A:66 , ASP A:69 , THR A:130 , ILE A:131 , THR A:132 , GLU A:133 , ASP A:190 , ASN A:191 , ARG A:231 , ILE A:232 , THR A:233 , ARG A:373 , MTL A:5600 , HOH A:5607 , HOH A:5677 , HOH A:5689 , HOH A:5690 , HOH A:5832 , HOH A:5858
BINDING SITE FOR RESIDUE NAD A 5500
2
AC3
SOFTWARE
ASN A:191 , ASP A:230 , ARG A:231 , LYS A:295 , ASN A:300 , HIS A:303 , ARG A:373 , VAL A:374 , LYS A:381 , NAD A:5500 , HOH A:5677
BINDING SITE FOR RESIDUE MTL A 5600
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1m2wa3 (A:287-492)
1b: SCOP_d1m2wb3 (B:287-492)
2a: SCOP_d1m2wa4 (A:1-286)
2b: SCOP_d1m2wb4 (B:1-286)
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Protein Domains
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Organisms
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)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
6-phosphogluconate dehydrogenase C-terminal domain-like
(119)
Superfamily
:
6-phosphogluconate dehydrogenase C-terminal domain-like
(119)
Family
:
Mannitol 2-dehydrogenase
(2)
Protein domain
:
Mannitol 2-dehydrogenase
(2)
Pseudomonas fluorescens [TaxId: 294]
(2)
1a
d1m2wa3
A:287-492
1b
d1m2wb3
B:287-492
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
6-phosphogluconate dehydrogenase-like, N-terminal domain
(69)
Protein domain
:
Mannitol 2-dehydrogenase
(2)
Pseudomonas fluorescens [TaxId: 294]
(2)
2a
d1m2wa4
A:1-286
2b
d1m2wb4
B:1-286
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1m2wA01 (A:2-285)
1b: CATH_1m2wB01 (B:2-285)
2a: CATH_1m2wA02 (A:286-492)
2b: CATH_1m2wB02 (B:286-492)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Pseudomonas fluorescens. Organism_taxid: 294. Strain: dsm50106.
(2)
1a
1m2wA01
A:2-285
1b
1m2wB01
B:2-285
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2
(60)
Homologous Superfamily
:
N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2
(59)
Pseudomonas fluorescens. Organism_taxid: 294. Strain: dsm50106.
(2)
2a
1m2wA02
A:286-492
2b
1m2wB02
B:286-492
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Mannitol_dh_C_1m2wB01 (B:220-465)
1b: PFAM_Mannitol_dh_C_1m2wB02 (B:220-465)
2a: PFAM_Mannitol_dh_1m2wB03 (B:27-192)
2b: PFAM_Mannitol_dh_1m2wB04 (B:27-192)
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Clan
:
6PGD_C
(47)
Family
:
Mannitol_dh_C
(2)
Pseudomonas fluorescens
(2)
1a
Mannitol_dh_C-1m2wB01
B:220-465
1b
Mannitol_dh_C-1m2wB02
B:220-465
Clan
:
NADP_Rossmann
(1239)
Family
:
Mannitol_dh
(2)
Pseudomonas fluorescens
(2)
2a
Mannitol_dh-1m2wB03
B:27-192
2b
Mannitol_dh-1m2wB04
B:27-192
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Asymmetric Unit 1
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Asym.Unit (177 KB)
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Biol.Unit 1 (88 KB)
Header - Biol.Unit 1
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