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1M2V
Asym. Unit
Info
Asym.Unit (242 KB)
Biol.Unit 1 (235 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE YEAST SEC23/24 HETERODIMER
Authors
:
X. Bi, R. A. Corpina, J. Goldberg
Date
:
25 Jun 02 (Deposition) - 20 Sep 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Zinc-Finger, Beta Barrel, Vwa Domain, Gelsolin Domain, , Protein Transport
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Bi, R. A. Corpina, J. Goldberg
Structure Of The Sec23/24-Sar1 Pre-Budding Complex Of The Copii Vesicle Coat
Nature V. 419 271 2002
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
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Label:
No.
Name
Count
Type
Full Name
1
ZN
2
Ligand/Ion
ZINC ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:56 , CYS A:61 , CYS A:80 , CYS A:83
BINDING SITE FOR RESIDUE ZN A 800
2
AC2
SOFTWARE
CYS B:231 , CYS B:234 , CYS B:253 , CYS B:256
BINDING SITE FOR RESIDUE ZN B 950
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Exons
(2, 2)
Info
All Exons
Exon 1.1 (B:61-926 (gaps))
Exon 2.1 (A:2-768 (gaps))
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
3: Boundary -/2.1
4: Boundary 2.1/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YIL109C
1
YIL109C.1
IX:160162-157382
2781
SEC24_YEAST
1-926
926
1
B:61-926 (gaps)
866
2.1
YPR181C
1
YPR181C.1
XVI:899663-897357
2307
SEC23_YEAST
1-768
768
1
A:2-768 (gaps)
767
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SCOP Domains
(10, 10)
Info
All SCOP Domains
01a: SCOP_d1m2va1 (A:524-626)
02a: SCOP_d1m2vb1 (B:647-753)
03a: SCOP_d1m2va2 (A:2-44,A:391-523)
04a: SCOP_d1m2vb2 (B:61-215,B:553-646)
05a: SCOP_d1m2va4 (A:627-768)
06a: SCOP_d1m2vb4 (B:754-926)
07a: SCOP_d1m2va3 (A:120-390)
08a: SCOP_d1m2vb3 (B:301-552)
09a: SCOP_d1m2va5 (A:45-119)
10a: SCOP_d1m2vb5 (B:216-300)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
ERP29 C domain-like
(13)
Superfamily
:
Helical domain of Sec23/24
(7)
Family
:
Helical domain of Sec23/24
(7)
Protein domain
:
Sec23
(3)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(3)
01a
d1m2va1
A:524-626
Protein domain
:
Sec24
(4)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(4)
02a
d1m2vb1
B:647-753
Class
:
All beta proteins
(24004)
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
beta-sandwich domain of Sec23/24
(7)
Family
:
beta-sandwich domain of Sec23/24
(7)
Protein domain
:
Sec23
(3)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(3)
03a
d1m2va2
A:2-44,A:391-523
Protein domain
:
Sec24
(4)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(4)
04a
d1m2vb2
B:61-215,B:553-646
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Gelsolin-like
(96)
Superfamily
:
C-terminal, gelsolin-like domain of Sec23/24
(7)
Family
:
C-terminal, gelsolin-like domain of Sec23/24
(7)
Protein domain
:
Sec23
(3)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(3)
05a
d1m2va4
A:627-768
Protein domain
:
Sec24
(4)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(4)
06a
d1m2vb4
B:754-926
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
vWA-like
(111)
Superfamily
:
vWA-like
(111)
Family
:
Trunk domain of Sec23/24
(7)
Protein domain
:
Sec23
(3)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(3)
07a
d1m2va3
A:120-390
Protein domain
:
Sec24
(4)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(4)
08a
d1m2vb3
B:301-552
Class
:
Small proteins
(3458)
Fold
:
Rubredoxin-like
(572)
Superfamily
:
Zn-finger domain of Sec23/24
(7)
Family
:
Zn-finger domain of Sec23/24
(7)
Protein domain
:
Sec23
(3)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(3)
09a
d1m2va5
A:45-119
Protein domain
:
Sec24
(4)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(4)
10a
d1m2vb5
B:216-300
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CATH Domains
(3, 5)
Info
all CATH domains
1a: CATH_1m2vB04 (B:302-362,B:373-551)
1b: CATH_1m2vA03 (A:120-397)
2a: CATH_1m2vA05 (A:626-728)
2b: CATH_1m2vB05 (B:754-902)
3a: CATH_1m2vA01 (A:2-49,A:109-119,A:398-512)
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.410, no name defined]
(87)
Baker's yeast (Saccharomyces cerevisiae)
(6)
1a
1m2vB04
B:302-362,B:373-551
1b
1m2vA03
A:120-397
Topology
:
Severin
(74)
Homologous Superfamily
:
Severin
(74)
Baker's yeast (Saccharomyces cerevisiae)
(9)
2a
1m2vA05
A:626-728
2b
1m2vB05
B:754-902
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
beta-sandwich domain of Sec23/24
(9)
Baker's yeast (Saccharomyces cerevisiae)
(3)
3a
1m2vA01
A:2-49,A:109-119,A:398-512
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Pfam Domains
(0, 0)
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Asym.Unit (242 KB)
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