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1M27
Asym. Unit
Info
Asym.Unit (36 KB)
Biol.Unit 1 (32 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF SAP/FYNSH3/SLAM TERNARY COMPLEX
Authors
:
B. Chan, J. Griesbach, H. K. Song, F. Poy, C. Terhorst, M. J. Eck
Date
:
21 Jun 02 (Deposition) - 06 May 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Sh2-Sh3 Interaction, Signaling Protein, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Chan, A. Lanyi, H. K. Song, J. Griesbach, M. Simarro-Grande, F. Poy, D. Howie, J. Sumegi, C. Terhorst, M. J. Eck
Sap Couples Fyn To Slam Immune Receptors.
Nat. Cell Biol. V. 5 155 2003
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: CITRATE ANION (FLCa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FLC
1
Ligand/Ion
CITRATE ANION
[
close Hetero Component info
]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:32 , SER A:34 , GLU A:35 , SER A:36 , CYS A:42 , ARG A:55 , HOH A:322 , TYR B:281
BINDING SITE FOR RESIDUE FLC A 300
[
close Site info
]
SAPs(SNPs)/Variants
(20, 20)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_048005 (Y7C, chain A, )
02: VAR_048006 (H8D, chain A, )
03: VAR_048007 (G16D, chain A, )
04: VAR_048008 (G27S, chain A, )
05: VAR_048009 (S28R, chain A, )
06: VAR_048010 (L31P, chain A, )
07: VAR_005612 (R32T, chain A, )
08: VAR_048011 (D33Y, chain A, )
09: VAR_048012 (C42W, chain A, )
10: VAR_048013 (G49V, chain A, )
11: VAR_048014 (T53I, chain A, )
12: VAR_048015 (Y54C, chain A, )
13: VAR_018307 (R55L, chain A, )
14: VAR_048016 (S57P, chain A, )
15: VAR_005613 (T68I, chain A, )
16: VAR_048017 (I84T, chain A, )
17: VAR_048018 (F87S, chain A, )
18: VAR_048019 (Q99P, chain A, )
19: VAR_005614 (P101L, chain A, )
20: VAR_048020 (V102G, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_048005
Y
7
C
SH21A_HUMAN
Disease (XLP1)
---
A
Y
7
C
02
UniProt
VAR_048006
H
8
D
SH21A_HUMAN
Disease (XLP1)
---
A
H
8
D
03
UniProt
VAR_048007
G
16
D
SH21A_HUMAN
Disease (XLP1)
---
A
G
16
D
04
UniProt
VAR_048008
G
27
S
SH21A_HUMAN
Disease (XLP1)
---
A
G
27
S
05
UniProt
VAR_048009
S
28
R
SH21A_HUMAN
Disease (XLP1)
---
A
S
28
R
06
UniProt
VAR_048010
L
31
P
SH21A_HUMAN
Disease (XLP1)
---
A
L
31
P
07
UniProt
VAR_005612
R
32
T
SH21A_HUMAN
Disease (XLP1)
---
A
R
32
T
08
UniProt
VAR_048011
D
33
Y
SH21A_HUMAN
Disease (XLP1)
---
A
D
33
Y
09
UniProt
VAR_048012
C
42
W
SH21A_HUMAN
Disease (XLP1)
---
A
C
42
W
10
UniProt
VAR_048013
G
49
V
SH21A_HUMAN
Disease (XLP1)
---
A
G
49
V
11
UniProt
VAR_048014
T
53
I
SH21A_HUMAN
Disease (XLP1)
---
A
T
53
I
12
UniProt
VAR_048015
Y
54
C
SH21A_HUMAN
Disease (XLP1)
---
A
Y
54
C
13
UniProt
VAR_018307
R
55
L
SH21A_HUMAN
Disease (XLP1)
---
A
R
55
L
14
UniProt
VAR_048016
S
57
P
SH21A_HUMAN
Unclassified
---
A
S
57
P
15
UniProt
VAR_005613
T
68
I
SH21A_HUMAN
Disease (XLP1)
---
A
T
68
I
16
UniProt
VAR_048017
I
84
T
SH21A_HUMAN
Disease (XLP1)
---
A
I
84
T
17
UniProt
VAR_048018
F
87
S
SH21A_HUMAN
Disease (XLP1)
---
A
F
87
S
18
UniProt
VAR_048019
Q
99
P
SH21A_HUMAN
Disease (XLP1)
---
A
Q
99
P
19
UniProt
VAR_005614
P
101
L
SH21A_HUMAN
Disease (XLP1)
28935184
A
P
101
L
20
UniProt
VAR_048020
V
102
G
SH21A_HUMAN
Disease (XLP1)
---
A
V
102
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SH2 (A:6-102)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SH2
PS50001
Src homology 2 (SH2) domain profile.
SH21A_HUMAN
6-102
1
A:6-102
[
close PROSITE info
]
Exons
(6, 6)
Info
All Exons
Exon 1.5 (B:276-286)
Exon 2.17e (C:84-115)
Exon 2.19g (C:115-144)
Exon 3.1a (A:1-46)
Exon 3.3a (A:46-67)
Exon 3.4b (A:68-104)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.4/1.5
2: Boundary 1.5/1.7
3: Boundary 2.16b/2.17e
4: Boundary 2.17e/2.19g
5: Boundary 2.19g/2.20d
6: Boundary -/3.1a
7: Boundary 3.1a/3.3a
8: Boundary 3.3a/3.4b
9: Boundary 3.4b/3.5c
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000302035
1a
ENSE00001850818
chr1:
160617085-160616660
426
SLAF1_HUMAN
1-26
26
0
-
-
1.2c
ENST00000302035
2c
ENSE00001166217
chr1:
160607319-160606981
339
SLAF1_HUMAN
26-139
114
0
-
-
1.3
ENST00000302035
3
ENSE00001166212
chr1:
160604687-160604403
285
SLAF1_HUMAN
139-234
96
0
-
-
1.4
ENST00000302035
4
ENSE00001166202
chr1:
160593975-160593886
90
SLAF1_HUMAN
234-264
31
0
-
-
1.5
ENST00000302035
5
ENSE00001166196
chr1:
160589639-160589566
74
SLAF1_HUMAN
264-288
25
1
B:276-286
11
1.7
ENST00000302035
7
ENSE00001166189
chr1:
160582370-160582278
93
SLAF1_HUMAN
289-319
31
0
-
-
1.8b
ENST00000302035
8b
ENSE00001820545
chr1:
160580588-160577890
2699
SLAF1_HUMAN
320-335
16
0
-
-
2.9b
ENST00000368667
9b
ENSE00001414024
chr6:
112115089-112114826
264
FYN_HUMAN
-
0
0
-
-
2.11
ENST00000368667
11
ENSE00001344307
chr6:
112101838-112101769
70
FYN_HUMAN
-
0
0
-
-
2.16b
ENST00000368667
16b
ENSE00002172897
chr6:
112041265-112041008
258
FYN_HUMAN
1-83
83
0
-
-
2.17e
ENST00000368667
17e
ENSE00002146962
chr6:
112035646-112035550
97
FYN_HUMAN
83-115
33
1
C:84-115
32
2.19g
ENST00000368667
19g
ENSE00002180388
chr6:
112029223-112029125
99
FYN_HUMAN
115-148
34
1
C:115-144
30
2.20d
ENST00000368667
20d
ENSE00002152369
chr6:
112025305-112025202
104
FYN_HUMAN
148-183
36
0
-
-
2.21b
ENST00000368667
21b
ENSE00002179099
chr6:
112024237-112024088
150
FYN_HUMAN
183-233
51
0
-
-
2.22b
ENST00000368667
22b
ENSE00002142092
chr6:
112021471-112021307
165
FYN_HUMAN
233-288
56
0
-
-
2.24e
ENST00000368667
24e
ENSE00001880540
chr6:
112017659-112017480
180
FYN_HUMAN
288-348
61
0
-
-
2.25a
ENST00000368667
25a
ENSE00002170268
chr6:
112015907-112015831
77
FYN_HUMAN
348-373
26
0
-
-
2.26
ENST00000368667
26
ENSE00002155280
chr6:
112015731-112015578
154
FYN_HUMAN
374-425
52
0
-
-
2.28a
ENST00000368667
28a
ENSE00002153373
chr6:
111995833-111995702
132
FYN_HUMAN
425-469
45
0
-
-
2.29e
ENST00000368667
29e
ENSE00002112481
chr6:
111983150-111982485
666
FYN_HUMAN
469-537
69
0
-
-
3.1a
ENST00000371139
1a
ENSE00001920695
X:123480194-123480629
436
SH21A_HUMAN
1-46
46
1
A:1-46
46
3.3a
ENST00000371139
3a
ENSE00001327828
X:123499611-123499674
64
SH21A_HUMAN
46-67
22
1
A:46-67
22
3.4b
ENST00000371139
4b
ENSE00001306519
X:123504026-123504170
145
SH21A_HUMAN
68-116
49
1
A:68-104
37
3.5c
ENST00000371139
5c
ENSE00001917567
X:123505201-123507005
1805
SH21A_HUMAN
116-128
13
0
-
-
[
close EXON info
]
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1m27c_ (C:)
2a: SCOP_d1m27a_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
SH3-domain
(369)
Family
:
SH3-domain
(255)
Protein domain
:
Fyn proto-oncogene tyrosine kinase, SH3 domain
(18)
Human (Homo sapiens) [TaxId: 9606]
(16)
1a
d1m27c_
C:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
SH2-like
(260)
Superfamily
:
SH2 domain
(260)
Family
:
SH2 domain
(225)
Protein domain
:
The Xlp protein Sap
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
2a
d1m27a_
A:
[
close SCOP info
]
CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1m27A00 (A:1-104)
2a: CATH_1m27C00 (C:84-144)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
SHC Adaptor Protein
(206)
Homologous Superfamily
:
SHC Adaptor Protein
(206)
Human (Homo sapiens)
(147)
1a
1m27A00
A:1-104
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
SH3 Domains
(267)
Human (Homo sapiens)
(133)
2a
1m27C00
C:84-144
[
close CATH info
]
Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_SH3_1_1m27C01 (C:88-135)
2a: PFAM_SH2_1m27A01 (A:6-87)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
SH3
(175)
Family
:
SH3_1
(141)
Homo sapiens (Human)
(69)
1a
SH3_1-1m27C01
C:88-135
Clan
:
no clan defined [family: SH2]
(119)
Family
:
SH2
(119)
Homo sapiens (Human)
(79)
2a
SH2-1m27A01
A:6-87
[
close Pfam info
]
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Protein & NOT PROSITE
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Chain C
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