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1M26
Asym. Unit
Info
Asym.Unit (111 KB)
Biol.Unit 1 (105 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF JACALIN-T-ANTIGEN COMPLEX
Authors
:
A. A. Jeyaprakash, P. G. Rani, G. B. Reddy, S. Banumathi, C. Betzel, A. Surolia, M. Vijayan
Date
:
21 Jun 02 (Deposition) - 12 Oct 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.62
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E,F,G,H (1x)
Keywords
:
All Beta Sheet Protein, Beta Prism I Fold, Sugar Binding Protein, Plant Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. A. Jeyaprakash, P. G. Rani, G. B. Reddy, S. Banumathi, C. Betzel, A. Surolia, M. Vijayan
Crystal Structure Of The Jacalin-T-Antigen Complex And A Comparative Study Of Lectin-T-Antigen Complexs
J. Mol. Biol. V. 321 637 2002
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE (A2Ga)
1b: N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE (A2Gb)
1c: N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE (A2Gc)
1d: N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE (A2Gd)
2a: BETA-D-GALACTOSE (GALa)
2b: BETA-D-GALACTOSE (GALb)
2c: BETA-D-GALACTOSE (GALc)
2d: BETA-D-GALACTOSE (GALd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
A2G
4
Ligand/Ion
N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE
2
GAL
4
Ligand/Ion
BETA-D-GALACTOSE
[
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]
Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
A2G A:135 , HOH A:289 , TYR G:71
BINDING SITE FOR RESIDUE GAL A 134
2
AC2
SOFTWARE
GLY A:1 , PHE A:47 , TYR A:78 , GLY A:121 , TYR A:122 , TRP A:123 , ASP A:125 , GAL A:134 , HOH A:302
BINDING SITE FOR RESIDUE A2G A 135
3
AC3
SOFTWARE
TYR C:78 , A2G C:135 , HOH C:351 , HOH C:352 , HOH C:664 , HOH D:551
BINDING SITE FOR RESIDUE GAL C 134
4
AC4
SOFTWARE
GLY C:1 , PHE C:47 , TYR C:78 , GLY C:121 , TYR C:122 , TRP C:123 , ASP C:125 , GAL C:134 , HOH C:354
BINDING SITE FOR RESIDUE A2G C 135
5
AC5
SOFTWARE
HOH A:233 , TYR E:78 , A2G E:135 , HOH E:394 , HOH E:562
BINDING SITE FOR RESIDUE GAL E 134
6
AC6
SOFTWARE
GLY E:1 , PHE E:47 , TYR E:78 , GLY E:121 , TYR E:122 , TRP E:123 , ASP E:125 , GAL E:134 , HOH E:650
BINDING SITE FOR RESIDUE A2G E 135
7
AC7
SOFTWARE
TYR G:78 , A2G G:135 , HOH G:398 , HOH G:399
BINDING SITE FOR RESIDUE GAL G 134
8
AC8
SOFTWARE
GLY G:1 , PHE G:47 , TYR G:78 , GLY G:121 , TYR G:122 , TRP G:123 , ASP G:125 , GAL G:134 , HOH G:574
BINDING SITE FOR RESIDUE A2G G 135
[
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]
SAPs(SNPs)/Variants
(12, 48)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_LECA_ARTIN_001 (V31I, chain A/C/E/G, )
02: VAR_LECA_ARTIN_002 (L34G, chain A/C/E/G, )
03: VAR_LECA_ARTIN_003 (K45L, chain A/C/E/G, )
04: VAR_LECA_ARTIN_004 (K45T, chain A/C/E/G, )
05: VAR_LECA_ARTIN_005 (M66D, chain A/C/E/G, )
06: VAR_LECA_ARTIN_006 (M66V, chain A/C/E/G, )
07: VAR_LECA_ARTIN_007 (E67M, chain A/C/E/G, )
08: VAR_LECA_ARTIN_008 (T72I, chain A/C/E/G, )
09: VAR_LECA_ARTIN_009 (N74K, chain A/C/E/G, )
10: VAR_LECA_ARTIN_010 (T102D, chain A/C/E/G, )
11: VAR_LECA_ARTIN_011 (I113V, chain A/C/E/G, )
12: VAR_LECA_ARTIN_012 (L131N, chain A/C/E/G, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_LECA_ARTIN_001
*
V
31
I
LECA_ARTIN
---
---
A/C/E/G
V
31
I
02
UniProt
VAR_LECA_ARTIN_002
*
L
34
G
LECA_ARTIN
---
---
A/C/E/G
L
34
G
03
UniProt
VAR_LECA_ARTIN_003
*
K
45
L
LECA_ARTIN
---
---
A/C/E/G
K
45
L
04
UniProt
VAR_LECA_ARTIN_004
*
K
45
T
LECA_ARTIN
---
---
A/C/E/G
K
45
T
05
UniProt
VAR_LECA_ARTIN_005
*
M
66
D
LECA_ARTIN
---
---
A/C/E/G
M
66
D
06
UniProt
VAR_LECA_ARTIN_006
*
M
66
V
LECA_ARTIN
---
---
A/C/E/G
M
66
V
07
UniProt
VAR_LECA_ARTIN_007
*
E
67
M
LECA_ARTIN
---
---
A/C/E/G
E
67
M
08
UniProt
VAR_LECA_ARTIN_008
*
T
72
I
LECA_ARTIN
---
---
A/C/E/G
T
72
I
09
UniProt
VAR_LECA_ARTIN_009
*
N
74
K
LECA_ARTIN
---
---
A/C/E/G
N
74
K
10
UniProt
VAR_LECA_ARTIN_010
*
T
102
D
LECA_ARTIN
---
---
A/C/E/G
T
102
D
11
UniProt
VAR_LECA_ARTIN_011
*
I
113
V
LECA_ARTIN
---
---
A/C/E/G
I
113
V
12
UniProt
VAR_LECA_ARTIN_012
*
L
131
N
LECA_ARTIN
---
---
A/C/E/G
L
131
N
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: JACALIN_LECTIN (A:1-133,C:1-133,E:1-133,G:1-133)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
JACALIN_LECTIN
PS51752
Jacalin-type lectin domain profile.
LECA_ARTIN
1-133
4
A:1-133
C:1-133
E:1-133
G:1-133
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1m26_1 (B:,A:)
1b: SCOP_d1m26_2 (D:,C:)
1c: SCOP_d1m26_3 (F:,E:)
1d: SCOP_d1m26_4 (H:,G:)
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)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
beta-Prism I
(50)
Superfamily
:
Mannose-binding lectins
(42)
Family
:
Mannose-binding lectins
(32)
Protein domain
:
Jacalin
(12)
Jackfruit (Artocarpus heterophyllus) [TaxId: 3489]
(10)
1a
d1m26.1
B:,A:
1b
d1m26.2
D:,C:
1c
d1m26.3
F:,E:
1d
d1m26.4
H:,G:
[
close SCOP info
]
CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1m26A00 (A:1-133)
1b: CATH_1m26C00 (C:1-133)
1c: CATH_1m26E00 (E:1-133)
1d: CATH_1m26G00 (G:1-133)
View:
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(
)
(
)
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Aligned Prism
(39)
Topology
:
Vitelline Membrane Outer Layer Protein I, subunit A
(39)
Homologous Superfamily
:
[code=2.100.10.30, no name defined]
(33)
Artocarpus integer. Organism_taxid: 3490.
(13)
1a
1m26A00
A:1-133
1b
1m26C00
C:1-133
1c
1m26E00
E:1-133
1d
1m26G00
G:1-133
[
close CATH info
]
Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Jacalin_1m26G01 (G:1-133)
1b: PFAM_Jacalin_1m26G02 (G:1-133)
1c: PFAM_Jacalin_1m26G03 (G:1-133)
1d: PFAM_Jacalin_1m26G04 (G:1-133)
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Clans
(
)
(
)
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(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Jacalin]
(35)
Family
:
Jacalin
(35)
Artocarpus integer (Jack fruit) (Artocarpus integrifolia)
(15)
1a
Jacalin-1m26G01
G:1-133
1b
Jacalin-1m26G02
G:1-133
1c
Jacalin-1m26G03
G:1-133
1d
Jacalin-1m26G04
G:1-133
[
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]
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