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1M1W
Theor. Model
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Theoretical Model (57 KB)
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Models
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Title
:
MOLECULAR DYNAMICS OF MMP-3, ADAM-9 AND ADAM-10: NEW IMPLICATIONS ON FAMILIARITY, STRUCTURE, FUNCTION AND SUBSTRATE AFFINITY
Authors
:
S. Manzetti, D. R. Mcculloch, A. C. Herington
Date
:
20 Jun 02 (Deposition) - 05 Jul 02 (Release) - 05 Apr 05 (Revision)
Method
:
THEORETICAL MODEL
Resolution
:
NOT APPLICABLE
Chains
:
Theor. Model : A,B (2 x)
Keywords
:
Metalloprotease, Metzincin, Mmp, Matrixin, Matrilysin, Peptidic, Substrate, Dimer
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Manzetti, D. R. Mcculloch, A. C. Herington, D. Van Der Spoel
Modeling Of Enzyme-Substrate Complexes For The Metalloproteases Mmp-3, Adam-9 And Adam-10
Comput. Aided Des. V. 17 551 2003
(for further references see the
PDB file header
)
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
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No.
Name
Count
Type
Full Name
1
CA
3
Ligand/Ion
CALCIUM ION
2
ZN
2
Ligand/Ion
ZINC ION
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (A:131-140)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
MMP3_HUMAN
215-224
1
A:131-140
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Exons
(5, 5)
Info
All Exons
Exon 1.2 (A:16-33)
Exon 1.3 (A:33-83)
Exon 1.4b (A:83-125)
Exon 1.5 (A:125-180)
Exon 1.6 (A:180-183)
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1: Boundary 1.1a/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4b
4: Boundary 1.4b/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000299855
1a
ENSE00002171374
chr11:
102714534-102714173
362
MMP3_HUMAN
1-35
35
0
-
-
1.2
ENST00000299855
2
ENSE00001105428
chr11:
102713647-102713403
245
MMP3_HUMAN
36-117
82
1
A:16-33
18
1.3
ENST00000299855
3
ENSE00001642002
chr11:
102713310-102713162
149
MMP3_HUMAN
117-167
51
1
A:33-83
51
1.4b
ENST00000299855
4b
ENSE00001105420
chr11:
102713010-102712885
126
MMP3_HUMAN
167-209
43
1
A:83-125
43
1.5
ENST00000299855
5
ENSE00001657829
chr11:
102711324-102711160
165
MMP3_HUMAN
209-264
56
1
A:125-180
56
1.6
ENST00000299855
6
ENSE00001105427
chr11:
102710983-102710839
145
MMP3_HUMAN
264-312
49
1
A:180-183
4
1.7
ENST00000299855
7
ENSE00001105439
chr11:
102709974-102709841
134
MMP3_HUMAN
312-357
46
0
-
-
1.8
ENST00000299855
8
ENSE00001801971
chr11:
102709441-102709282
160
MMP3_HUMAN
357-410
54
0
-
-
1.9
ENST00000299855
9
ENSE00001105448
chr11:
102708132-102708029
104
MMP3_HUMAN
410-445
36
0
-
-
1.11
ENST00000299855
11
ENSE00001292630
chr11:
102706957-102706532
426
MMP3_HUMAN
445-477
33
0
-
-
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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