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1M1P
Biol. Unit 9
Info
Asym.Unit (138 KB)
Biol.Unit 1 (24 KB)
Biol.Unit 10 (65 KB)
Biol.Unit 11 (45 KB)
Biol.Unit 12 (45 KB)
Biol.Unit 13 (44 KB)
Biol.Unit 2 (25 KB)
Biol.Unit 3 (24 KB)
Biol.Unit 4 (24 KB)
Biol.Unit 5 (25 KB)
Biol.Unit 6 (24 KB)
Biol.Unit 7 (104 KB)
Biol.Unit 8 (103 KB)
Biol.Unit 9 (84 KB)
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(1)
Title
:
P21 CRYSTAL STRUCTURE OF THE TETRAHEME CYTOCHROME C3 FROM SHEWANELLA ONEIDENSIS MR1
Authors
:
D. Leys, T. E. Meyer, A. I. Tsapin, K. H. Nealson, M. A. Cusanovich, J. J. Van Beeumen
Date
:
20 Jun 02 (Deposition) - 14 Aug 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: A,C,D,E,F (1x)
Biol. Unit 8: A,C,D,E,F (1x)
Biol. Unit 9: A,D,E,F (1x)
Biol. Unit 10: D,E,F (1x)
Biol. Unit 11: E,F (1x)
Biol. Unit 12: D,E (1x)
Biol. Unit 13: C,D (1x)
Keywords
:
Tetraheme Cytochrome C, Electron Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Leys, T. E. Meyer, A. I. Tsapin, K. H. Nealson, M. A. Cusanovich, J. J. Van Beeumen
Crystal Structures At Atomic Resolution Reveal The Novel Concept Of 'Electron-Harvesting' As A Role For The Small Tetraheme Cytochrome C
J. Biol. Chem. V. 277 35703 2002
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
1b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
1c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
1d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
1e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
1f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
1g: PROTOPORPHYRIN IX CONTAINING FE (HEMg)
1h: PROTOPORPHYRIN IX CONTAINING FE (HEMh)
1i: PROTOPORPHYRIN IX CONTAINING FE (HEMi)
1j: PROTOPORPHYRIN IX CONTAINING FE (HEMj)
1k: PROTOPORPHYRIN IX CONTAINING FE (HEMk)
1l: PROTOPORPHYRIN IX CONTAINING FE (HEMl)
1m: PROTOPORPHYRIN IX CONTAINING FE (HEMm)
1n: PROTOPORPHYRIN IX CONTAINING FE (HEMn)
1o: PROTOPORPHYRIN IX CONTAINING FE (HEMo)
1p: PROTOPORPHYRIN IX CONTAINING FE (HEMp)
1q: PROTOPORPHYRIN IX CONTAINING FE (HEMq)
1r: PROTOPORPHYRIN IX CONTAINING FE (HEMr)
1s: PROTOPORPHYRIN IX CONTAINING FE (HEMs)
1t: PROTOPORPHYRIN IX CONTAINING FE (HEMt)
1u: PROTOPORPHYRIN IX CONTAINING FE (HEMu)
1v: PROTOPORPHYRIN IX CONTAINING FE (HEMv)
1w: PROTOPORPHYRIN IX CONTAINING FE (HEMw)
1x: PROTOPORPHYRIN IX CONTAINING FE (HEMx)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
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Sites
(18, 18)
Info
All Sites
01: AC2 (SOFTWARE)
02: AC3 (SOFTWARE)
03: AC5 (SOFTWARE)
04: AC6 (SOFTWARE)
05: AC7 (SOFTWARE)
06: AC8 (SOFTWARE)
07: BC8 (SOFTWARE)
08: BC9 (SOFTWARE)
09: CC1 (SOFTWARE)
10: CC2 (SOFTWARE)
11: CC3 (SOFTWARE)
12: CC4 (SOFTWARE)
13: CC5 (SOFTWARE)
14: CC6 (SOFTWARE)
15: CC7 (SOFTWARE)
16: CC8 (SOFTWARE)
17: CC9 (SOFTWARE)
18: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC2
SOFTWARE
HIS F:79 , ASP F:80 , ASP F:81 , ARG F:83 , HOH F:1217 , HOH F:1247
BINDING SITE FOR RESIDUE SO4 F 1163
02
AC3
SOFTWARE
HIS A:79 , ASP A:80 , ASP A:81 , ARG A:83 , HOH A:1239
BINDING SITE FOR RESIDUE SO4 A 1164
03
AC5
SOFTWARE
SER A:6 , HIS A:9 , CYS A:15 , SER A:17 , CYS A:18 , HIS A:19 , PRO A:24 , ALA A:59 , ALA A:63 , VAL A:64 , HIS A:65 , HOH A:1186 , HOH A:1218 , HOH A:1314 , HOH A:1320 , HOH A:1342
BINDING SITE FOR RESIDUE HEM A 801
04
AC6
SOFTWARE
PRO A:51 , HIS A:52 , ASN A:55 , CYS A:75 , CYS A:78 , HIS A:79 , ARG A:83 , THR A:84 , VAL A:88 , HEM A:803 , HOH A:1195 , HOH A:1239 , HOH A:1331
BINDING SITE FOR RESIDUE HEM A 804
05
AC7
SOFTWARE
HIS A:9 , SER A:17 , GLN A:34 , CYS A:35 , CYS A:38 , HIS A:39 , HIS A:62 , GLY A:70 , HEM A:803 , HOH A:1217 , HOH A:1219 , HOH A:1255 , HOH A:1256 , HOH A:1260 , HOH A:1283 , HOH A:1297 , PRO F:24 , SER F:25 , ALA F:26 , HEM F:801
BINDING SITE FOR RESIDUE HEM A 802
06
AC8
SOFTWARE
HIS A:39 , ASP A:46 , VAL A:48 , HIS A:49 , HIS A:52 , CYS A:58 , CYS A:61 , HIS A:62 , PRO A:73 , LEU A:89 , HEM A:802 , HEM A:804 , HOH A:1217 , HOH A:1255 , HOH A:1290
BINDING SITE FOR RESIDUE HEM A 803
07
BC8
SOFTWARE
SER D:6 , HIS D:9 , CYS D:15 , SER D:17 , CYS D:18 , HIS D:19 , HIS D:62 , ALA D:63 , VAL D:64 , HIS D:65 , HEM D:802 , HOH D:821 , HOH D:958 , HOH D:962 , HOH D:982
BINDING SITE FOR RESIDUE HEM D 801
08
BC9
SOFTWARE
PRO D:51 , HIS D:52 , LEU D:56 , CYS D:75 , SER D:77 , CYS D:78 , HIS D:79 , ARG D:83 , VAL D:88 , HEM D:803 , HOH D:817 , HOH D:826 , HOH D:848 , HOH D:855 , HOH D:968 , THR E:84 , SER E:85 , ALA E:86 , HOH E:811 , HOH E:817 , HOH E:853
BINDING SITE FOR RESIDUE HEM D 804
09
CC1
SOFTWARE
LEU D:5 , PHE D:8 , HIS D:9 , SER D:17 , GLN D:34 , CYS D:35 , CYS D:38 , HIS D:39 , CYS D:58 , HIS D:62 , VAL D:69 , GLY D:70 , HEM D:801 , HEM D:803 , HOH D:822 , HOH D:831 , HOH D:832 , HOH D:839 , HOH D:842
BINDING SITE FOR RESIDUE HEM D 802
10
CC2
SOFTWARE
HIS D:39 , HIS D:49 , HIS D:52 , CYS D:58 , CYS D:61 , HIS D:62 , LYS D:72 , PRO D:73 , SER D:85 , HEM D:802 , HEM D:804 , HOH D:850 , HOH D:851 , HOH D:882 , HOH D:897 , HOH D:942
BINDING SITE FOR RESIDUE HEM D 803
11
CC3
SOFTWARE
SER E:6 , HIS E:9 , CYS E:15 , CYS E:18 , HIS E:19 , ALA E:63 , VAL E:64 , HIS E:65 , HOH E:834 , HOH E:886 , HOH E:935 , HOH E:947 , HOH E:964 , HOH E:978 , GLU F:11
BINDING SITE FOR RESIDUE HEM E 801
12
CC4
SOFTWARE
PRO E:51 , HIS E:52 , ASN E:55 , ASP E:60 , CYS E:75 , CYS E:78 , HIS E:79 , ARG E:83 , HEM E:803 , HOH E:807 , HOH E:810 , HOH E:824 , HOH E:859 , HOH E:861 , HOH E:932
BINDING SITE FOR RESIDUE HEM E 804
13
CC5
SOFTWARE
LEU E:5 , PHE E:8 , HIS E:9 , SER E:17 , GLN E:34 , CYS E:35 , CYS E:38 , HIS E:39 , HIS E:62 , GLY E:70 , HEM E:803 , HOH E:889 , HOH E:924 , HOH E:927 , SER F:37 , CYS F:38 , HIS F:39 , HEM F:802 , HEM F:803 , HOH F:1174 , HOH F:1272 , HOH F:1293
BINDING SITE FOR RESIDUE HEM E 802
14
CC6
SOFTWARE
HIS E:39 , LEU E:42 , HIS E:49 , HIS E:52 , CYS E:58 , CYS E:61 , HIS E:62 , LYS E:72 , PRO E:73 , SER E:85 , HEM E:802 , HEM E:804 , HOH E:851 , HOH E:885 , HOH E:887 , HOH E:968 , HOH F:1299
BINDING SITE FOR RESIDUE HEM E 803
15
CC7
SOFTWARE
SER A:12 , HEM A:802 , GLU E:16 , SER F:6 , HIS F:9 , CYS F:15 , SER F:17 , CYS F:18 , HIS F:19 , PRO F:24 , VAL F:64 , HIS F:65 , HOH F:1176 , HOH F:1188 , HOH F:1196 , HOH F:1202 , HOH F:1229 , HOH F:1231 , HOH F:1237 , HOH F:1313
BINDING SITE FOR RESIDUE HEM F 801
16
CC8
SOFTWARE
ALA B:86 , LYS B:90 , LYS B:91 , PRO F:51 , HIS F:52 , LEU F:56 , PRO F:73 , THR F:74 , CYS F:75 , CYS F:78 , HIS F:79 , ARG F:83 , VAL F:88 , HEM F:803 , HOH F:1187 , HOH F:1212 , HOH F:1247 , HOH F:1274
BINDING SITE FOR RESIDUE HEM F 804
17
CC9
SOFTWARE
CYS E:38 , HIS E:39 , HEM E:802 , PHE F:8 , HIS F:9 , SER F:17 , GLN F:34 , CYS F:35 , CYS F:38 , HIS F:39 , HIS F:62 , GLY F:70 , HEM F:803 , HOH F:1209 , HOH F:1220 , HOH F:1257 , HOH F:1293 , HOH F:1294 , HOH F:1299 , HOH F:1314
BINDING SITE FOR RESIDUE HEM F 802
18
DC1
SOFTWARE
HEM E:802 , HIS F:39 , MET F:45 , ASP F:46 , HIS F:49 , HIS F:52 , CYS F:58 , CYS F:61 , HIS F:62 , LYS F:72 , PRO F:73 , SER F:85 , LEU F:89 , HEM F:802 , HEM F:804 , HOH F:1272 , HOH F:1295 , HOH F:1310
BINDING SITE FOR RESIDUE HEM F 803
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
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Exons
(0, 0)
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All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1m1pa_ (A:)
1b: SCOP_d1m1pb_ (B:)
1c: SCOP_d1m1pc_ (C:)
1d: SCOP_d1m1pd_ (D:)
1e: SCOP_d1m1pe_ (E:)
1f: SCOP_d1m1pf_ (F:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Multiheme cytochromes
(149)
Superfamily
:
Multiheme cytochromes
(149)
Family
:
Di-heme elbow motif
(53)
Protein domain
:
Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
(22)
Shewanella oneidensis [TaxId: 70863]
(3)
1a
d1m1pa_
A:
1b
d1m1pb_
B:
1c
d1m1pc_
C:
1d
d1m1pd_
D:
1e
d1m1pe_
E:
1f
d1m1pf_
F:
[
close SCOP info
]
CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1m1pB00 (B:2-91)
1b: CATH_1m1pA00 (A:2-89)
1c: CATH_1m1pE00 (E:2-89)
1d: CATH_1m1pF00 (F:2-89)
1e: CATH_1m1pC00 (C:3-89)
1f: CATH_1m1pD00 (D:4-89)
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(
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Topologies
(
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Flavocytochrome C3; Chain A, domain 2
(23)
Homologous Superfamily
:
Flavocytochrome C3; Chain A
(23)
Shewanella oneidensis. Organism_taxid: 70863. Strain: strain mr1
(2)
1a
1m1pB00
B:2-91
1b
1m1pA00
A:2-89
1c
1m1pE00
E:2-89
1d
1m1pF00
F:2-89
1e
1m1pC00
C:3-89
1f
1m1pD00
D:4-89
[
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Pfam Domains
(0, 0)
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all PFAM domains
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Asym.Unit (138 KB)
Header - Asym.Unit
Biol.Unit 1 (24 KB)
Header - Biol.Unit 1
Biol.Unit 10 (65 KB)
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Biol.Unit 11 (45 KB)
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Biol.Unit 12 (45 KB)
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Biol.Unit 13 (44 KB)
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Biol.Unit 2 (25 KB)
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Biol.Unit 9 (84 KB)
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