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1M1P
Asym. Unit
Info
Asym.Unit (138 KB)
Biol.Unit 1 (24 KB)
Biol.Unit 10 (65 KB)
Biol.Unit 11 (45 KB)
Biol.Unit 12 (45 KB)
Biol.Unit 13 (44 KB)
Biol.Unit 2 (25 KB)
Biol.Unit 3 (24 KB)
Biol.Unit 4 (24 KB)
Biol.Unit 5 (25 KB)
Biol.Unit 6 (24 KB)
Biol.Unit 7 (104 KB)
Biol.Unit 8 (103 KB)
Biol.Unit 9 (84 KB)
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(1)
Title
:
P21 CRYSTAL STRUCTURE OF THE TETRAHEME CYTOCHROME C3 FROM SHEWANELLA ONEIDENSIS MR1
Authors
:
D. Leys, T. E. Meyer, A. I. Tsapin, K. H. Nealson, M. A. Cusanovich, J. J. Van Beeumen
Date
:
20 Jun 02 (Deposition) - 14 Aug 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: A,C,D,E,F (1x)
Biol. Unit 8: A,C,D,E,F (1x)
Biol. Unit 9: A,D,E,F (1x)
Biol. Unit 10: D,E,F (1x)
Biol. Unit 11: E,F (1x)
Biol. Unit 12: D,E (1x)
Biol. Unit 13: C,D (1x)
Keywords
:
Tetraheme Cytochrome C, Electron Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Leys, T. E. Meyer, A. I. Tsapin, K. H. Nealson, M. A. Cusanovich, J. J. Van Beeumen
Crystal Structures At Atomic Resolution Reveal The Novel Concept Of 'Electron-Harvesting' As A Role For The Small Tetraheme Cytochrome C
J. Biol. Chem. V. 277 35703 2002
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 28)
Info
All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
1b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
1c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
1d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
1e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
1f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
1g: PROTOPORPHYRIN IX CONTAINING FE (HEMg)
1h: PROTOPORPHYRIN IX CONTAINING FE (HEMh)
1i: PROTOPORPHYRIN IX CONTAINING FE (HEMi)
1j: PROTOPORPHYRIN IX CONTAINING FE (HEMj)
1k: PROTOPORPHYRIN IX CONTAINING FE (HEMk)
1l: PROTOPORPHYRIN IX CONTAINING FE (HEMl)
1m: PROTOPORPHYRIN IX CONTAINING FE (HEMm)
1n: PROTOPORPHYRIN IX CONTAINING FE (HEMn)
1o: PROTOPORPHYRIN IX CONTAINING FE (HEMo)
1p: PROTOPORPHYRIN IX CONTAINING FE (HEMp)
1q: PROTOPORPHYRIN IX CONTAINING FE (HEMq)
1r: PROTOPORPHYRIN IX CONTAINING FE (HEMr)
1s: PROTOPORPHYRIN IX CONTAINING FE (HEMs)
1t: PROTOPORPHYRIN IX CONTAINING FE (HEMt)
1u: PROTOPORPHYRIN IX CONTAINING FE (HEMu)
1v: PROTOPORPHYRIN IX CONTAINING FE (HEMv)
1w: PROTOPORPHYRIN IX CONTAINING FE (HEMw)
1x: PROTOPORPHYRIN IX CONTAINING FE (HEMx)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
HEM
24
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
2
SO4
4
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS C:79 , ASP C:80 , ASP C:81 , ARG C:83 , HOH C:1288 , HOH C:1295 , HOH C:1300
BINDING SITE FOR RESIDUE SO4 C 1162
02
AC2
SOFTWARE
HIS F:79 , ASP F:80 , ASP F:81 , ARG F:83 , HOH F:1217 , HOH F:1247
BINDING SITE FOR RESIDUE SO4 F 1163
03
AC3
SOFTWARE
HIS A:79 , ASP A:80 , ASP A:81 , ARG A:83 , HOH A:1239
BINDING SITE FOR RESIDUE SO4 A 1164
04
AC4
SOFTWARE
HIS B:79 , ASP B:80 , ASP B:81 , ARG B:83 , HOH B:1262 , HOH B:1323 , HOH B:1361
BINDING SITE FOR RESIDUE SO4 B 1165
05
AC5
SOFTWARE
SER A:6 , HIS A:9 , CYS A:15 , SER A:17 , CYS A:18 , HIS A:19 , PRO A:24 , ALA A:59 , ALA A:63 , VAL A:64 , HIS A:65 , HOH A:1186 , HOH A:1218 , HOH A:1314 , HOH A:1320 , HOH A:1342
BINDING SITE FOR RESIDUE HEM A 801
06
AC6
SOFTWARE
PRO A:51 , HIS A:52 , ASN A:55 , CYS A:75 , CYS A:78 , HIS A:79 , ARG A:83 , THR A:84 , VAL A:88 , HEM A:803 , HOH A:1195 , HOH A:1239 , HOH A:1331
BINDING SITE FOR RESIDUE HEM A 804
07
AC7
SOFTWARE
HIS A:9 , SER A:17 , GLN A:34 , CYS A:35 , CYS A:38 , HIS A:39 , HIS A:62 , GLY A:70 , HEM A:803 , HOH A:1217 , HOH A:1219 , HOH A:1255 , HOH A:1256 , HOH A:1260 , HOH A:1283 , HOH A:1297 , PRO F:24 , SER F:25 , ALA F:26 , HEM F:801
BINDING SITE FOR RESIDUE HEM A 802
08
AC8
SOFTWARE
HIS A:39 , ASP A:46 , VAL A:48 , HIS A:49 , HIS A:52 , CYS A:58 , CYS A:61 , HIS A:62 , PRO A:73 , LEU A:89 , HEM A:802 , HEM A:804 , HOH A:1217 , HOH A:1255 , HOH A:1290
BINDING SITE FOR RESIDUE HEM A 803
09
AC9
SOFTWARE
SER B:6 , HIS B:9 , CYS B:15 , SER B:17 , CYS B:18 , HIS B:19 , PRO B:24 , VAL B:64 , HIS B:65 , HEM B:802 , HOH B:1226 , HOH B:1253 , HOH B:1260 , HOH B:1289 , HOH B:1295 , HOH B:1347 , HOH B:1359
BINDING SITE FOR RESIDUE HEM B 801
10
BC1
SOFTWARE
PRO B:51 , HIS B:52 , ASN B:55 , CYS B:75 , SER B:77 , CYS B:78 , HIS B:79 , ARG B:83 , VAL B:88 , HEM B:803 , HOH B:1257 , HOH B:1325 , HOH B:1361
BINDING SITE FOR RESIDUE HEM B 804
11
BC2
SOFTWARE
LEU B:5 , HIS B:9 , SER B:17 , GLN B:34 , CYS B:35 , CYS B:38 , HIS B:39 , HIS B:62 , VAL B:69 , GLY B:70 , HEM B:801 , HEM B:803 , HOH B:1269 , HOH B:1301 , HOH B:1340 , HOH B:1354
BINDING SITE FOR RESIDUE HEM B 802
12
BC3
SOFTWARE
HIS B:39 , ASP B:46 , HIS B:49 , HIS B:52 , CYS B:58 , CYS B:61 , HIS B:62 , PRO B:73 , SER B:85 , LEU B:89 , HEM B:802 , HEM B:804 , HOH B:1299 , HOH B:1355
BINDING SITE FOR RESIDUE HEM B 803
13
BC4
SOFTWARE
SER C:6 , HIS C:9 , CYS C:15 , CYS C:18 , HIS C:19 , PRO C:24 , VAL C:64 , HIS C:65 , HOH C:1212 , HOH C:1219 , HOH C:1253 , HOH C:1312
BINDING SITE FOR RESIDUE HEM C 801
14
BC5
SOFTWARE
PRO C:51 , HIS C:52 , ASN C:55 , LEU C:56 , CYS C:75 , SER C:77 , CYS C:78 , HIS C:79 , ARG C:83 , VAL C:88 , HEM C:803 , HOH C:1300
BINDING SITE FOR RESIDUE HEM C 804
15
BC6
SOFTWARE
LEU C:5 , PHE C:8 , HIS C:9 , SER C:17 , GLN C:34 , CYS C:35 , CYS C:38 , HIS C:39 , CYS C:58 , HIS C:62 , VAL C:69 , GLY C:70 , HEM C:803 , HOH C:1177 , HOH C:1217 , HOH C:1223 , HOH C:1231 , HOH C:1241 , HOH C:1245 , HOH C:1248 , HOH C:1273 , HOH C:1310
BINDING SITE FOR RESIDUE HEM C 802
16
BC7
SOFTWARE
HIS C:39 , HIS C:49 , HIS C:52 , CYS C:58 , CYS C:61 , HIS C:62 , LYS C:72 , PRO C:73 , SER C:85 , HEM C:802 , HEM C:804 , HOH C:1266 , HOH C:1272 , HOH C:1285 , HOH C:1324
BINDING SITE FOR RESIDUE HEM C 803
17
BC8
SOFTWARE
SER D:6 , HIS D:9 , CYS D:15 , SER D:17 , CYS D:18 , HIS D:19 , HIS D:62 , ALA D:63 , VAL D:64 , HIS D:65 , HEM D:802 , HOH D:821 , HOH D:958 , HOH D:962 , HOH D:982
BINDING SITE FOR RESIDUE HEM D 801
18
BC9
SOFTWARE
PRO D:51 , HIS D:52 , LEU D:56 , CYS D:75 , SER D:77 , CYS D:78 , HIS D:79 , ARG D:83 , VAL D:88 , HEM D:803 , HOH D:817 , HOH D:826 , HOH D:848 , HOH D:855 , HOH D:968 , THR E:84 , SER E:85 , ALA E:86 , HOH E:811 , HOH E:817 , HOH E:853
BINDING SITE FOR RESIDUE HEM D 804
19
CC1
SOFTWARE
LEU D:5 , PHE D:8 , HIS D:9 , SER D:17 , GLN D:34 , CYS D:35 , CYS D:38 , HIS D:39 , CYS D:58 , HIS D:62 , VAL D:69 , GLY D:70 , HEM D:801 , HEM D:803 , HOH D:822 , HOH D:831 , HOH D:832 , HOH D:839 , HOH D:842
BINDING SITE FOR RESIDUE HEM D 802
20
CC2
SOFTWARE
HIS D:39 , HIS D:49 , HIS D:52 , CYS D:58 , CYS D:61 , HIS D:62 , LYS D:72 , PRO D:73 , SER D:85 , HEM D:802 , HEM D:804 , HOH D:850 , HOH D:851 , HOH D:882 , HOH D:897 , HOH D:942
BINDING SITE FOR RESIDUE HEM D 803
21
CC3
SOFTWARE
SER E:6 , HIS E:9 , CYS E:15 , CYS E:18 , HIS E:19 , ALA E:63 , VAL E:64 , HIS E:65 , HOH E:834 , HOH E:886 , HOH E:935 , HOH E:947 , HOH E:964 , HOH E:978 , GLU F:11
BINDING SITE FOR RESIDUE HEM E 801
22
CC4
SOFTWARE
PRO E:51 , HIS E:52 , ASN E:55 , ASP E:60 , CYS E:75 , CYS E:78 , HIS E:79 , ARG E:83 , HEM E:803 , HOH E:807 , HOH E:810 , HOH E:824 , HOH E:859 , HOH E:861 , HOH E:932
BINDING SITE FOR RESIDUE HEM E 804
23
CC5
SOFTWARE
LEU E:5 , PHE E:8 , HIS E:9 , SER E:17 , GLN E:34 , CYS E:35 , CYS E:38 , HIS E:39 , HIS E:62 , GLY E:70 , HEM E:803 , HOH E:889 , HOH E:924 , HOH E:927 , SER F:37 , CYS F:38 , HIS F:39 , HEM F:802 , HEM F:803 , HOH F:1174 , HOH F:1272 , HOH F:1293
BINDING SITE FOR RESIDUE HEM E 802
24
CC6
SOFTWARE
HIS E:39 , LEU E:42 , HIS E:49 , HIS E:52 , CYS E:58 , CYS E:61 , HIS E:62 , LYS E:72 , PRO E:73 , SER E:85 , HEM E:802 , HEM E:804 , HOH E:851 , HOH E:885 , HOH E:887 , HOH E:968 , HOH F:1299
BINDING SITE FOR RESIDUE HEM E 803
25
CC7
SOFTWARE
SER A:12 , HEM A:802 , GLU E:16 , SER F:6 , HIS F:9 , CYS F:15 , SER F:17 , CYS F:18 , HIS F:19 , PRO F:24 , VAL F:64 , HIS F:65 , HOH F:1176 , HOH F:1188 , HOH F:1196 , HOH F:1202 , HOH F:1229 , HOH F:1231 , HOH F:1237 , HOH F:1313
BINDING SITE FOR RESIDUE HEM F 801
26
CC8
SOFTWARE
ALA B:86 , LYS B:90 , LYS B:91 , PRO F:51 , HIS F:52 , LEU F:56 , PRO F:73 , THR F:74 , CYS F:75 , CYS F:78 , HIS F:79 , ARG F:83 , VAL F:88 , HEM F:803 , HOH F:1187 , HOH F:1212 , HOH F:1247 , HOH F:1274
BINDING SITE FOR RESIDUE HEM F 804
27
CC9
SOFTWARE
CYS E:38 , HIS E:39 , HEM E:802 , PHE F:8 , HIS F:9 , SER F:17 , GLN F:34 , CYS F:35 , CYS F:38 , HIS F:39 , HIS F:62 , GLY F:70 , HEM F:803 , HOH F:1209 , HOH F:1220 , HOH F:1257 , HOH F:1293 , HOH F:1294 , HOH F:1299 , HOH F:1314
BINDING SITE FOR RESIDUE HEM F 802
28
DC1
SOFTWARE
HEM E:802 , HIS F:39 , MET F:45 , ASP F:46 , HIS F:49 , HIS F:52 , CYS F:58 , CYS F:61 , HIS F:62 , LYS F:72 , PRO F:73 , SER F:85 , LEU F:89 , HEM F:802 , HEM F:804 , HOH F:1272 , HOH F:1295 , HOH F:1310
BINDING SITE FOR RESIDUE HEM F 803
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1m1pa_ (A:)
1b: SCOP_d1m1pb_ (B:)
1c: SCOP_d1m1pc_ (C:)
1d: SCOP_d1m1pd_ (D:)
1e: SCOP_d1m1pe_ (E:)
1f: SCOP_d1m1pf_ (F:)
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Multiheme cytochromes
(149)
Superfamily
:
Multiheme cytochromes
(149)
Family
:
Di-heme elbow motif
(53)
Protein domain
:
Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
(22)
Shewanella oneidensis [TaxId: 70863]
(3)
1a
d1m1pa_
A:
1b
d1m1pb_
B:
1c
d1m1pc_
C:
1d
d1m1pd_
D:
1e
d1m1pe_
E:
1f
d1m1pf_
F:
[
close SCOP info
]
CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1m1pB00 (B:2-91)
1b: CATH_1m1pA00 (A:2-89)
1c: CATH_1m1pE00 (E:2-89)
1d: CATH_1m1pF00 (F:2-89)
1e: CATH_1m1pC00 (C:3-89)
1f: CATH_1m1pD00 (D:4-89)
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(
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Flavocytochrome C3; Chain A, domain 2
(23)
Homologous Superfamily
:
Flavocytochrome C3; Chain A
(23)
Shewanella oneidensis. Organism_taxid: 70863. Strain: strain mr1
(2)
1a
1m1pB00
B:2-91
1b
1m1pA00
A:2-89
1c
1m1pE00
E:2-89
1d
1m1pF00
F:2-89
1e
1m1pC00
C:3-89
1f
1m1pD00
D:4-89
[
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Pfam Domains
(0, 0)
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all PFAM domains
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