PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1M1E
Asym. Unit
Info
Asym.Unit (99 KB)
Biol.Unit 1 (96 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
BETA-CATENIN ARMADILLO REPEAT DOMAIN BOUND TO ICAT
Authors
:
D. L. Daniels, W. I. Weis
Date
:
18 Jun 02 (Deposition) - 16 Oct 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Cell Adhesion, Cytoskeleton, Armadillo Repeats, Transciption Factor, Structural Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. L. Daniels, W. I. Weis
Icat Inhibits Beta-Catenin Binding To Tcf/Lef-Family Transcription Factors And The General Coactivator P300 Using Independent Structural Modules.
Mol. Cell V. 10 573 2002
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 9)
Info
All PROSITE Patterns/Profiles
1: ARM_REPEAT (A:193-236|A:151-191|A:235-277|A:27...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ARM_REPEAT
PS50176
Armadillo/plakoglobin ARM repeat profile.
CTNB1_MOUSE
193-236
151-191
235-277
277-319
319-362
400-442
442-484
489-532
594-636
9
A:193-236
A:151-191
A:235-277
A:277-319
A:319-362
A:400-442
A:442-484
A:489-532
A:594-636
[
close PROSITE info
]
Exons
(3, 3)
Info
All Exons
Exon 1.6 (B:9-32)
Exon 1.7 (B:33-63 (gaps))
Exon 1.8c (B:63-78)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.5/1.6
2: Boundary 1.6/1.7
3: Boundary 1.7/1.8c
4: Boundary 1.8c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000400904
1a
ENSE00001830430
chr1:
9970394-9970153
242
CNBP1_HUMAN
-
0
0
-
-
1.5
ENST00000400904
5
ENSE00001643659
chr1:
9938047-9937963
85
CNBP1_HUMAN
-
0
0
-
-
1.6
ENST00000400904
6
ENSE00001600669
chr1:
9932146-9932027
120
CNBP1_HUMAN
1-32
32
1
B:9-32
24
1.7
ENST00000400904
7
ENSE00001267940
chr1:
9931335-9931245
91
CNBP1_HUMAN
33-63
31
1
B:33-63 (gaps)
31
1.8c
ENST00000400904
8c
ENSE00001868123
chr1:
9910834-9910167
668
CNBP1_HUMAN
63-81
19
1
B:63-78
16
[
close EXON info
]
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1m1ea_ (A:)
2a: SCOP_d1m1eb_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
ARM repeat
(317)
Family
:
Armadillo repeat
(77)
Protein domain
:
beta-Catenin
(21)
Mouse (Mus musculus) [TaxId: 10090]
(13)
1a
d1m1ea_
A:
Fold
:
beta-catenin-interacting protein ICAT
(3)
Superfamily
:
beta-catenin-interacting protein ICAT
(3)
Family
:
beta-catenin-interacting protein ICAT
(3)
Protein domain
:
beta-catenin-interacting protein ICAT
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
2a
d1m1eb_
B:
[
close SCOP info
]
CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1m1eA00 (A:151-671)
2a: CATH_1m1eB01 (B:9-54)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Leucine-rich Repeat Variant
(77)
Homologous Superfamily
:
Leucine-rich Repeat Variant
(75)
House mouse (Mus musculus)
(10)
1a
1m1eA00
A:151-671
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
beta-catenin-interacting protein ICAT, Chain B, ?????domain1
(3)
House mouse (Mus musculus)
(1)
2a
1m1eB01
B:9-54
[
close CATH info
]
Pfam Domains
(2, 5)
Info
all PFAM domains
1a: PFAM_Arm_1m1eA01 (A:583-623)
1b: PFAM_Arm_1m1eA02 (A:583-623)
1c: PFAM_Arm_1m1eA03 (A:583-623)
1d: PFAM_Arm_1m1eA04 (A:583-623)
2a: PFAM_ICAT_1m1eB01 (B:9-78)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
TPR
(230)
Family
:
Arm
(24)
Mus musculus (Mouse)
(4)
1a
Arm-1m1eA01
A:583-623
1b
Arm-1m1eA02
A:583-623
1c
Arm-1m1eA03
A:583-623
1d
Arm-1m1eA04
A:583-623
Clan
:
no clan defined [family: ICAT]
(3)
Family
:
ICAT
(3)
Homo sapiens (Human)
(3)
2a
ICAT-1m1eB01
B:9-78
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (99 KB)
Header - Asym.Unit
Biol.Unit 1 (96 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1M1E
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help