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1M15
Asym. Unit
Info
Asym.Unit (147 KB)
Biol.Unit 1 (142 KB)
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(1)
Title
:
TRANSITION STATE STRUCTURE OF ARGININE KINASE
Authors
:
M. S. Yousef, F. Fabiola, J. L. Gattis, T. Somasundaram, M. S. Chapman
Date
:
17 Jun 02 (Deposition) - 04 Dec 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Arginine Kinase, Creatine Kinase, Phosphagen Kinase, Transition State Analog, Adenosine Triphosphate, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. S. Yousef, F. Fabiola, J. L. Gattis, T. Somasundaram, M. S. Chapman
Refinement Of The Arginine Kinase Transition-State Analogue Complex At 1. 2 A Resolution: Mechanistic Insights.
Acta Crystallogr. , Sect. D V. 58 2009 2002
(for further references see the
PDB file header
)
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Hetero Components
(4, 5)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
2a: ARGININE (ARGa)
3a: MAGNESIUM ION (MGa)
4a: NITRATE ION (NO3a)
4b: NITRATE ION (NO3b)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
ARG
1
Mod. Amino Acid
ARGININE
3
MG
1
Ligand/Ion
MAGNESIUM ION
4
NO3
2
Ligand/Ion
NITRATE ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:112 , LEU A:113 , ASP A:114 , PRO A:115 , GLY A:191 , GLN A:196 , GLY A:237 , ASP A:238 , HOH A:1098 , HOH A:1320
BINDING SITE FOR RESIDUE NO3 A 500
2
AC2
SOFTWARE
ARG A:126 , GLU A:225 , ARG A:229 , ASN A:274 , ARG A:309 , GLU A:314 , ADP A:400 , ARG A:403 , MG A:408 , HOH A:1220 , HOH A:1297 , HOH A:1298
BINDING SITE FOR RESIDUE NO3 A 405
3
AC3
SOFTWARE
ADP A:400 , NO3 A:405 , HOH A:1296 , HOH A:1297 , HOH A:1298
BINDING SITE FOR RESIDUE MG A 408
4
AC4
SOFTWARE
SER A:63 , GLY A:64 , VAL A:65 , GLY A:66 , TYR A:68 , GLU A:225 , CYS A:271 , THR A:273 , ASN A:274 , GLU A:314 , HIS A:315 , NO3 A:405 , HOH A:1224 , HOH A:1227 , HOH A:1240
BINDING SITE FOR RESIDUE ARG A 403
5
AC5
SOFTWARE
SER A:122 , ARG A:124 , ARG A:126 , HIS A:185 , TRP A:221 , ARG A:229 , MET A:233 , ARG A:280 , SER A:282 , VAL A:283 , HIS A:284 , ARG A:309 , THR A:311 , ARG A:312 , GLY A:313 , GLU A:314 , ASP A:324 , NO3 A:405 , MG A:408 , HOH A:1209 , HOH A:1210 , HOH A:1215 , HOH A:1230 , HOH A:1296 , HOH A:1297 , HOH A:1298
BINDING SITE FOR RESIDUE ADP A 400
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: PHOSPHAGEN_KINASE_N (A:9-91)
2: PHOSPHAGEN_KINASE_C (A:119-356)
3: PHOSPHAGEN_KINASE (A:271-277)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PHOSPHAGEN_KINASE_N
PS51509
Phosphagen kinase N-terminal domain profile.
KARG_LIMPO
9-91
1
A:9-91
2
PHOSPHAGEN_KINASE_C
PS51510
Phosphagen kinase C-terminal domain profile.
KARG_LIMPO
119-356
1
A:119-356
3
PHOSPHAGEN_KINASE
PS00112
Phosphagen kinase active site signature.
KARG_LIMPO
271-277
1
A:271-277
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1m15a1 (A:2-95)
2a: SCOP_d1m15a2 (A:96-357)
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Classes
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)
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)
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Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Guanido kinase N-terminal domain
(35)
Superfamily
:
Guanido kinase N-terminal domain
(35)
Family
:
Guanido kinase N-terminal domain
(21)
Protein domain
:
Arginine kinase, N-domain
(13)
Horseshoe crab (Limulus polyphemus) [TaxId: 6850]
(11)
1a
d1m15a1
A:2-95
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Glutamine synthetase/guanido kinase
(68)
Superfamily
:
Glutamine synthetase/guanido kinase
(68)
Family
:
Guanido kinase catalytic domain
(29)
Protein domain
:
Arginine kinase, C-terminal domain
(13)
Horseshoe crab (Limulus polyphemus) [TaxId: 6850]
(11)
2a
d1m15a2
A:96-357
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1m15A02 (A:98-357)
2a: CATH_1m15A01 (A:2-95)
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)
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)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Creatine Kinase; Chain A, domain 2
(27)
Homologous Superfamily
:
Creatine Kinase; Chain
(27)
Atlantic horseshoe crab (Limulus polyphemus)
(7)
1a
1m15A02
A:98-357
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase Creatine Kinase; Chain A, domain 1
(26)
Homologous Superfamily
:
Transferase Creatine Kinase, Chain A, domain 1
(26)
Atlantic horseshoe crab (Limulus polyphemus)
(7)
2a
1m15A01
A:2-95
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_ATP_gua_Ptrans_1m15A01 (A:114-356)
2a: PFAM_ATP_gua_PtransN_1m15A02 (A:18-93)
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Clan
:
GCS
(23)
Family
:
ATP-gua_Ptrans
(14)
Limulus polyphemus (Atlantic horseshoe crab)
(6)
1a
ATP-gua_Ptrans-1m15A01
A:114-356
Clan
:
no clan defined [family: ATP-gua_PtransN]
(14)
Family
:
ATP-gua_PtransN
(14)
Limulus polyphemus (Atlantic horseshoe crab)
(6)
2a
ATP-gua_PtransN-1m15A02
A:18-93
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Chain A
Asymmetric Unit 1
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Asym.Unit (147 KB)
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