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Biol. Unit 1
Info
Asym.Unit (184 KB)
Biol.Unit 1 (177 KB)
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(1)
Title
:
YEAST GLUTATHIONE SYNTHASE BOUND TO GAMMA-GLUTAMYL-CYSTEINE, AMP-PNP AND 2 MAGNESIUM IONS
Authors
:
A. Gogos, L. Shapiro, S. K. Burley, New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date
:
14 Jun 02 (Deposition) - 11 Dec 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Amine/Carboxylate Ligase, Structural Genomics, Psi, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Gogos, L. Shapiro
Large Conformational Changes In The Catalytic Cycle Of Glutathione Synthase
Structure V. 10 1669 2002
(for further references see the
PDB file header
)
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Hetero Components
(3, 11)
Info
All Hetero Components
1a: GAMMA-GLUTAMYLCYSTEINE (3GCa)
1b: GAMMA-GLUTAMYLCYSTEINE (3GCb)
2a: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPa)
2b: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
3GC
2
Ligand/Ion
GAMMA-GLUTAMYLCYSTEINE
2
ANP
2
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
3
MG
-1
Ligand/Ion
MAGNESIUM ION
4
SO4
7
Ligand/Ion
SULFATE ION
[
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:146 , ANP A:504 , HOH A:2517 , HOH A:2585 , HOH A:2603
BINDING SITE FOR RESIDUE MG A 502
02
AC2
SOFTWARE
GLU B:1146 , ANP B:1504 , HOH B:2559 , HOH B:2673 , HOH B:2674
BINDING SITE FOR RESIDUE MG B 1502
03
AC3
SOFTWARE
GLU A:146 , GLU A:386 , ANP A:504 , HOH A:2001
BINDING SITE FOR RESIDUE MG A 503
04
AC4
SOFTWARE
GLU B:1146 , GLU B:1386 , ANP B:1504 , HOH B:2732
BINDING SITE FOR RESIDUE MG B 1503
05
AC5
SOFTWARE
LYS A:136 , LYS A:137 , ARG A:273 , HOH A:2705 , HOH A:2707
BINDING SITE FOR RESIDUE SO4 A 506
06
AC6
SOFTWARE
ARG A:163 , HOH A:2388 , HOH A:2747
BINDING SITE FOR RESIDUE SO4 A 507
07
AC7
SOFTWARE
LYS A:113 , SER A:114 , ARG B:1366 , ARG B:1370 , HOH B:2579
BINDING SITE FOR RESIDUE SO4 B 508
08
AC8
SOFTWARE
LYS B:1136 , LYS B:1137 , ARG B:1273 , HOH B:2699
BINDING SITE FOR RESIDUE SO4 B 509
09
AC9
SOFTWARE
ARG B:1163 , HOH B:2478 , HOH B:2528
BINDING SITE FOR RESIDUE SO4 B 510
10
BC1
SOFTWARE
GLY A:389 , ASN A:391 , TYR A:393 , ANP A:504 , HOH A:2581
BINDING SITE FOR RESIDUE SO4 A 511
11
BC2
SOFTWARE
GLY B:1389 , ASN B:1390 , ASN B:1391 , TYR B:1393 , ANP B:1504 , HOH B:2374
BINDING SITE FOR RESIDUE SO4 B 512
12
BC3
SOFTWARE
VAL A:145 , GLU A:146 , LYS A:324 , LYS A:382 , GLU A:386 , GLY A:387 , ASN A:391 , TYR A:393 , MET A:415 , GLU A:416 , LEU A:417 , ILE A:418 , GLU A:442 , LYS A:469 , 3GC A:501 , MG A:502 , MG A:503 , SO4 A:511 , HOH A:2013 , HOH A:2107 , HOH A:2233 , HOH A:2353 , HOH A:2517 , HOH A:2585 , HOH A:2603 , HOH A:2724
BINDING SITE FOR RESIDUE ANP A 504
13
BC4
SOFTWARE
SO4 B:512 , VAL B:1145 , GLU B:1146 , LYS B:1324 , VAL B:1380 , LYS B:1382 , GLU B:1386 , ASN B:1391 , TYR B:1393 , MET B:1415 , GLU B:1416 , LEU B:1417 , ILE B:1418 , GLU B:1442 , LYS B:1469 , 3GC B:1501 , MG B:1502 , MG B:1503 , HOH B:2189 , HOH B:2372 , HOH B:2376 , HOH B:2554 , HOH B:2559 , HOH B:2673 , HOH B:2674
BINDING SITE FOR RESIDUE ANP B 1504
14
BC5
SOFTWARE
ARG A:128 , ASN A:148 , VAL A:150 , SER A:151 , VAL A:152 , SER A:153 , GLU A:228 , ASN A:230 , GLN A:234 , ARG A:285 , TYR A:288 , ARG A:467 , ANP A:504 , HOH A:2298 , HOH A:2517 , HOH A:2724
BINDING SITE FOR RESIDUE 3GC A 501
15
BC6
SOFTWARE
ARG B:1128 , VAL B:1150 , SER B:1151 , VAL B:1152 , SER B:1153 , GLU B:1228 , ASN B:1230 , GLN B:1234 , ARG B:1285 , TYR B:1288 , ARG B:1467 , ANP B:1504 , HOH B:2286 , HOH B:2674
BINDING SITE FOR RESIDUE 3GC B 1501
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1m0wa2 (A:6-210,A:324-491)
1b: SCOP_d1m0wb2 (B:1005-1210,B:1324-1491)
2a: SCOP_d1m0wa1 (A:216-323)
2b: SCOP_d1m0wb1 (B:1217-1323)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
ATP-grasp
(191)
Superfamily
:
Glutathione synthetase ATP-binding domain-like
(158)
Family
:
Eukaryotic glutathione synthetase ATP-binding domain
(3)
Protein domain
:
Eukaryotic glutathione synthetase ATP-binding domain
(3)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(2)
1a
d1m0wa2
A:6-210,A:324-491
1b
d1m0wb2
B:1005-1210,B:1324-1491
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PreATP-grasp domain
(131)
Superfamily
:
PreATP-grasp domain
(131)
Family
:
Eukaryotic glutathione synthetase, substrate-binding domain
(3)
Protein domain
:
Eukaryotic glutathione synthetase, substrate-binding domain
(3)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(2)
2a
d1m0wa1
A:216-323
2b
d1m0wb1
B:1217-1323
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CATH Domains
(5, 10)
Info
all CATH domains
1a: CATH_1m0wA02 (A:52-63,A:118-159,A:438-491)
1b: CATH_1m0wB02 (B:1052-1063,B:1118-1159,B:1438-1491)
2a: CATH_1m0wB05 (B:1356-1417)
2b: CATH_1m0wA05 (A:356-417)
3a: CATH_1m0wA01 (A:7-51,A:160-188,A:427-437)
3b: CATH_1m0wB01 (B:1007-1051,B:1160-1188,B:1427-1437)
4a: CATH_1m0wB04 (B:1189-1322)
4b: CATH_1m0wA04 (A:189-322)
5a: CATH_1m0wA03 (A:64-115,A:323-355)
5b: CATH_1m0wB03 (B:1064-1115,B:1323-1355)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
D-amino Acid Aminotransferase; Chain A, domain 1
(175)
Homologous Superfamily
:
ATP-grasp fold, B domain
(118)
Baker's yeast (Saccharomyces cerevisiae)
(8)
1a
1m0wA02
A:52-63,A:118-159,A:438-491
1b
1m0wB02
B:1052-1063,B:1118-1159,B:1438-1491
Topology
:
Dna Ligase; domain 1
(375)
Homologous Superfamily
:
[code=3.30.1490.50, no name defined]
(4)
Baker's yeast (Saccharomyces cerevisiae)
(2)
2a
1m0wB05
B:1356-1417
2b
1m0wA05
A:356-417
Homologous Superfamily
:
[code=3.30.1490.80, no name defined]
(3)
Baker's yeast (Saccharomyces cerevisiae)
(2)
3a
1m0wA01
A:7-51,A:160-188,A:427-437
3b
1m0wB01
B:1007-1051,B:1160-1188,B:1427-1437
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1760, no name defined]
(6)
Baker's yeast (Saccharomyces cerevisiae)
(2)
4a
1m0wB04
B:1189-1322
4b
1m0wA04
A:189-322
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Glutathione Synthetase; Chain A, domain 3
(6)
Homologous Superfamily
:
Glutathione Synthetase; Chain A, domain 3
(6)
Baker's yeast (Saccharomyces cerevisiae)
(2)
5a
1m0wA03
A:64-115,A:323-355
5b
1m0wB03
B:1064-1115,B:1323-1355
[
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Pfam Domains
(0, 0)
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