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1M0T
Asym. Unit
Info
Asym.Unit (167 KB)
Biol.Unit 1 (162 KB)
Biol.Unit 2 (320 KB)
Biol.Unit 3 (319 KB)
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(1)
Title
:
YEAST GLUTATHIONE SYNTHASE
Authors
:
A. Gogos, L. Shapiro, S. K. Burley, New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date
:
14 Jun 02 (Deposition) - 11 Dec 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (2x)
Biol. Unit 3: A,B (2x)
Keywords
:
Amine/Carboxylate Ligase, Structural Genomics, Psi, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Gogos, L. Shapiro
Large Conformational Changes In The Catalytic Cycle Of Glutathione Synthase
Structure V. 10 1669 2002
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
View:
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Label:
No.
Name
Count
Type
Full Name
1
SO4
6
Ligand/Ion
SULFATE ION
[
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:74 , SER A:341 , ASP A:342 , LYS A:345 , GLN B:1210
BINDING SITE FOR RESIDUE SO4 B 501
2
AC2
SOFTWARE
GLN A:210 , ARG B:1074 , ILE B:1340 , SER B:1341 , ASP B:1342 , LYS B:1345
BINDING SITE FOR RESIDUE SO4 B 502
3
AC3
SOFTWARE
ARG B:1128 , PHE B:1154 , ARG B:1467 , HOH B:2116 , HOH B:2349
BINDING SITE FOR RESIDUE SO4 B 503
4
AC4
SOFTWARE
ARG A:128 , SER A:153 , ARG A:467
BINDING SITE FOR RESIDUE SO4 A 504
5
AC5
SOFTWARE
LEU A:112 , SER A:114 , ALA A:115 , LYS A:119 , ARG A:366
BINDING SITE FOR RESIDUE SO4 A 505
6
AC6
SOFTWARE
ASN A:25 , LYS A:160 , THR B:1024 , ASN B:1025 , HOH B:2439
BINDING SITE FOR RESIDUE SO4 B 506
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(1, 2)
Info
All Exons
Exon 1.1 (A:5-491 (gaps) | B:1005-1491 (gaps...)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YOL049W
1
YOL049W.1
XV:238618-240093
1476
GSHB_YEAST
1-491
491
2
A:5-491 (gaps)
B:1005-1491 (gaps)
487
487
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1m0ta2 (A:5-213,A:324-491)
1b: SCOP_d1m0tb2 (B:1005-1213,B:1324-1491)
2a: SCOP_d1m0ta1 (A:214-323)
2b: SCOP_d1m0tb1 (B:1214-1323)
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(
)
(
)
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)
(
)
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(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
ATP-grasp
(191)
Superfamily
:
Glutathione synthetase ATP-binding domain-like
(158)
Family
:
Eukaryotic glutathione synthetase ATP-binding domain
(3)
Protein domain
:
Eukaryotic glutathione synthetase ATP-binding domain
(3)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(2)
1a
d1m0ta2
A:5-213,A:324-491
1b
d1m0tb2
B:1005-1213,B:1324-1491
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PreATP-grasp domain
(131)
Superfamily
:
PreATP-grasp domain
(131)
Family
:
Eukaryotic glutathione synthetase, substrate-binding domain
(3)
Protein domain
:
Eukaryotic glutathione synthetase, substrate-binding domain
(3)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(2)
2a
d1m0ta1
A:214-323
2b
d1m0tb1
B:1214-1323
[
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CATH Domains
(5, 10)
Info
all CATH domains
1a: CATH_1m0tB02 (B:1052-1063,B:1117-1159,B:1438-1491)
1b: CATH_1m0tA02 (A:52-63,A:118-159,A:438-491)
2a: CATH_1m0tA05 (A:356-417)
2b: CATH_1m0tB05 (B:1356-1417)
3a: CATH_1m0tA01 (A:7-51,A:160-188,A:427-437)
3b: CATH_1m0tB01 (B:1007-1051,B:1160-1188,B:1427-1437)
4a: CATH_1m0tA04 (A:189-322)
4b: CATH_1m0tB04 (B:1189-1322)
5a: CATH_1m0tA03 (A:64-115,A:323-355)
5b: CATH_1m0tB03 (B:1064-1114,B:1323-1355)
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)
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)
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(
)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
D-amino Acid Aminotransferase; Chain A, domain 1
(175)
Homologous Superfamily
:
ATP-grasp fold, B domain
(118)
Baker's yeast (Saccharomyces cerevisiae)
(8)
1a
1m0tB02
B:1052-1063,B:1117-1159,B:1438-1491
1b
1m0tA02
A:52-63,A:118-159,A:438-491
Topology
:
Dna Ligase; domain 1
(375)
Homologous Superfamily
:
[code=3.30.1490.50, no name defined]
(4)
Baker's yeast (Saccharomyces cerevisiae)
(2)
2a
1m0tA05
A:356-417
2b
1m0tB05
B:1356-1417
Homologous Superfamily
:
[code=3.30.1490.80, no name defined]
(3)
Baker's yeast (Saccharomyces cerevisiae)
(2)
3a
1m0tA01
A:7-51,A:160-188,A:427-437
3b
1m0tB01
B:1007-1051,B:1160-1188,B:1427-1437
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1760, no name defined]
(6)
Baker's yeast (Saccharomyces cerevisiae)
(2)
4a
1m0tA04
A:189-322
4b
1m0tB04
B:1189-1322
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Glutathione Synthetase; Chain A, domain 3
(6)
Homologous Superfamily
:
Glutathione Synthetase; Chain A, domain 3
(6)
Baker's yeast (Saccharomyces cerevisiae)
(2)
5a
1m0tA03
A:64-115,A:323-355
5b
1m0tB03
B:1064-1114,B:1323-1355
[
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_GSH_synthase_1m0tB01 (B:1216-1321)
1b: PFAM_GSH_synthase_1m0tB02 (B:1216-1321)
2a: PFAM_GSH_synth_ATP_1m0tB03 (B:1005-1490)
2b: PFAM_GSH_synth_ATP_1m0tB04 (B:1005-1490)
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Clans
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)
(
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)
(
)
Organisms
(
)
(
)
Clan
:
PreATP-grasp
(8)
Family
:
GSH_synthase
(4)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(1)
1a
GSH_synthase-1m0tB01
B:1216-1321
1b
GSH_synthase-1m0tB02
B:1216-1321
Clan
:
no clan defined [family: GSH_synth_ATP]
(4)
Family
:
GSH_synth_ATP
(4)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(1)
2a
GSH_synth_ATP-1m0tB03
B:1005-1490
2b
GSH_synth_ATP-1m0tB04
B:1005-1490
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Asym.Unit (167 KB)
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