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Asym. Unit
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Asym.Unit (154 KB)
Biol.Unit 1 (148 KB)
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(1)
Title
:
RAT NEURONAL NOS HEME DOMAIN WITH N-BUTYL-N'-HYDROXYGUANIDINE BOUND
Authors
:
H. Li, H. Shimizu, M. Flinspach, J. Jamal, W. Yang, M. Xian, T. Cai, E. Z. W P. G. Wang, T. L. Poulos
Date
:
11 Jun 02 (Deposition) - 27 Nov 02 (Release) - 13 Oct 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Nitric Oxide Synthase, Oxydoreductase, Heme-Enzyme, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Li, H. Shimizu, M. Flinspach, J. Jamal, W. Yang, M. Xian, T. Cai, E. Z. Wen, Q. Jia, P. G. Wang, T. L. Poulos
The Novel Binding Mode Of N-Alkyl-N'-Hydroxyguanidine To Neuronal Nitric Oxide Synthase Provides Mechanistic Insight Into No Biosynthesis
Biochemistry V. 41 13868 2002
(for further references see the
PDB file header
)
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Hetero Components
(5, 9)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
2a: N-BUTYL-N'-HYDROXYGUANIDINE (BHHa)
2b: N-BUTYL-N'-HYDROXYGUANIDINE (BHHb)
3a: 5,6,7,8-TETRAHYDROBIOPTERIN (H4Ba)
3b: 5,6,7,8-TETRAHYDROBIOPTERIN (H4Bb)
4a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
4b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
5a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
2
Ligand/Ion
ACETATE ION
2
BHH
2
Ligand/Ion
N-BUTYL-N'-HYDROXYGUANIDINE
3
H4B
2
Ligand/Ion
5,6,7,8-TETRAHYDROBIOPTERIN
4
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
5
ZN
1
Ligand/Ion
ZINC ION
[
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:417 , TRP A:587 , SER A:657 , HEM A:750 , HOH A:1059
BINDING SITE FOR RESIDUE ACT A 860
2
AC2
SOFTWARE
GLN B:420 , TRP B:587 , HOH B:1956 , HOH B:2113 , HOH B:2161
BINDING SITE FOR RESIDUE ACT B 1860
3
AC3
SOFTWARE
CYS A:326 , CYS A:331 , CYS B:326 , CYS B:331
BINDING SITE FOR RESIDUE ZN A 900
4
AC4
SOFTWARE
TRP A:409 , CYS A:415 , SER A:457 , PHE A:584 , SER A:585 , GLY A:586 , TRP A:587 , GLU A:592 , TRP A:678 , TYR A:706 , H4B A:760 , BHH A:831 , ACT A:860 , HOH A:905 , HOH A:907 , HOH A:918 , HOH A:973 , HOH A:980 , HOH A:986 , HOH A:1060
BINDING SITE FOR RESIDUE HEM A 750
5
AC5
SOFTWARE
SER A:334 , MET A:336 , ARG A:596 , VAL A:677 , TRP A:678 , HEM A:750 , HOH A:902 , HOH A:905 , HOH A:917 , HOH A:936 , HOH A:1028 , TRP B:676 , PHE B:691 , HIS B:692 , GLN B:693 , GLU B:694
BINDING SITE FOR RESIDUE H4B A 760
6
AC6
SOFTWARE
GLN A:478 , PRO A:565 , ALA A:566 , GLY A:586 , TRP A:587 , GLU A:592 , HEM A:750 , HOH A:914 , HOH A:1060
BINDING SITE FOR RESIDUE BHH A 831
7
AC7
SOFTWARE
TRP B:409 , CYS B:415 , PHE B:584 , SER B:585 , TRP B:587 , GLU B:592 , TRP B:678 , TYR B:706 , H4B B:1760 , BHH B:1831 , HOH B:1872 , HOH B:1892 , HOH B:1942 , HOH B:1962 , HOH B:1988 , HOH B:2079
BINDING SITE FOR RESIDUE HEM B 750
8
AC8
SOFTWARE
TRP A:676 , PHE A:691 , HIS A:692 , GLN A:693 , GLU A:694 , SER B:334 , MET B:336 , ARG B:596 , VAL B:677 , TRP B:678 , HEM B:750 , HOH B:1861 , HOH B:1886 , HOH B:1892 , HOH B:1941
BINDING SITE FOR RESIDUE H4B B 1760
9
AC9
SOFTWARE
GLN B:478 , PRO B:565 , VAL B:567 , GLY B:586 , TRP B:587 , GLU B:592 , HEM B:750 , HOH B:1873 , HOH B:1879
BINDING SITE FOR RESIDUE BHH B 1831
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: NOS (A:414-421,B:414-421)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NOS
PS60001
Nitric oxide synthase (NOS) signature.
NOS1_RAT
414-421
2
A:414-421
B:414-421
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1m00a_ (A:)
1b: SCOP_d1m00b_ (B:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Nitric oxide (NO) synthase oxygenase domain
(313)
Superfamily
:
Nitric oxide (NO) synthase oxygenase domain
(313)
Family
:
Nitric oxide (NO) synthase oxygenase domain
(313)
Protein domain
:
Nitric oxide (NO) synthase oxygenase domain
(298)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(154)
1a
d1m00a_
A:
1b
d1m00b_
B:
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1m00A03 (A:543-565,A:588-653)
1b: CATH_1m00B03 (B:543-565,B:588-653)
2a: CATH_1m00B01 (B:314-430,B:457-467,B:571-585,B:655-679)
2b: CATH_1m00A01 (A:314-430,A:457-467,A:571-585,A:655-679)
3a: CATH_1m00A02 (A:431-456,A:471-542,A:706-710)
3b: CATH_1m00B02 (B:431-456,B:471-542,B:706-710)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Bovine Endothelial Nitric Oxide Synthase Heme Domain; Chain: A,domain 3
(105)
Homologous Superfamily
:
Nitric Oxide Synthase; Chain A, domain 3
(105)
Norway rat (Rattus norvegicus)
(25)
1a
1m00A03
A:543-565,A:588-653
1b
1m00B03
B:543-565,B:588-653
Topology
:
Nitric Oxide Synthase; Chain A, domain 1
(105)
Homologous Superfamily
:
Nitric Oxide Synthase; Chain A, domain 1
(105)
Norway rat (Rattus norvegicus)
(25)
2a
1m00B01
B:314-430,B:457-467,B:571-585,B:655-679
2b
1m00A01
A:314-430,A:457-467,A:571-585,A:655-679
Topology
:
Nitric Oxide Synthase;Heme Domain; Chain A, domain 2
(105)
Homologous Superfamily
:
Nitric Oxide Synthase;Heme Domain;Chain A domain 2
(105)
Norway rat (Rattus norvegicus)
(25)
3a
1m00A02
A:431-456,A:471-542,A:706-710
3b
1m00B02
B:431-456,B:471-542,B:706-710
[
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]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_NO_synthase_1m00B01 (B:348-717)
1b: PFAM_NO_synthase_1m00B02 (B:348-717)
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)
Clan
:
no clan defined [family: NO_synthase]
(140)
Family
:
NO_synthase
(140)
Rattus norvegicus (Rat)
(79)
1a
NO_synthase-1m00B01
B:348-717
1b
NO_synthase-1m00B02
B:348-717
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Asymmetric Unit 1
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