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1LY7
Asym. Unit
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Asym.Unit (472 KB)
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Models
(15 )
Title
:
THE SOLUTION STRUCTURE OF THE THE C-TERMINAL DOMAIN OF FRATAXIN, THE PROTEIN RESPONSIBLE FOR FRIEDREICH ATAXIA
Authors
:
G. Musco, G. Stier, B. Kolmerer, S. Adinolfi, S. Martin, T. Frenkiel, T. Gibson, A. Pastore
Date
:
07 Jun 02 (Deposition) - 26 Jun 02 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (15 x)
Keywords
:
Alpha-Beta, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Musco, G. Stier, B. Kolmerer, S. Adinolfi, S. Martin, T. Frenkiel, T. Gibson, A. Pastore
Towards A Structural Understanding Of Friedreich'S Ataxia: The Solution Structure Of Frataxin
Structure Fold. Des. V. 8 695 2000
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(9, 9)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_016065 (L106S, chain A, )
2: VAR_002428 (D122Y, chain A, )
3: VAR_002429 (G130V, chain A, )
4: VAR_002430 (I154F, chain A, )
5: VAR_002431 (W155R, chain A, )
6: VAR_008139 (R165C, chain A, )
7: VAR_008140 (L182F, chain A, )
8: VAR_016066 (L198R, chain A, )
9: VAR_049100 (S202C, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_016065
L
106
S
FRDA_HUMAN
Disease (FRDA)
---
A
L
106
S
2
UniProt
VAR_002428
D
122
Y
FRDA_HUMAN
Disease (FRDA)
---
A
D
122
Y
3
UniProt
VAR_002429
G
130
V
FRDA_HUMAN
Disease (FRDA)
---
A
G
130
V
4
UniProt
VAR_002430
I
154
F
FRDA_HUMAN
Disease (FRDA)
---
A
I
154
F
5
UniProt
VAR_002431
W
155
R
FRDA_HUMAN
Disease (FRDA)
---
A
W
155
R
6
UniProt
VAR_008139
R
165
C
FRDA_HUMAN
Disease (FRDA)
---
A
R
165
C
7
UniProt
VAR_008140
L
182
F
FRDA_HUMAN
Disease (FRDA)
---
A
L
182
F
8
UniProt
VAR_016066
L
198
R
FRDA_HUMAN
Disease (FRDA)
---
A
L
198
R
9
UniProt
VAR_049100
S
202
C
FRDA_HUMAN
Polymorphism
1052195
A
S
202
C
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: FRATAXIN_2 (A:91-198)
2: FRATAXIN_1 (A:144-158)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FRATAXIN_2
PS50810
Frataxin family profile.
FRDA_HUMAN
90-198
1
A:91-198
2
FRATAXIN_1
PS01344
Frataxin family signature.
FRDA_HUMAN
144-158
1
A:144-158
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Exons
(3, 3)
Info
All Exons
Exon 1.4 (A:90-128)
Exon 1.5a (A:129-161)
Exon 1.6d (A:161-210)
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All Exon Boundaries
1: Boundary 1.3a/1.4
2: Boundary 1.4/1.5a
3: Boundary 1.5a/1.6d
4: Boundary 1.6d/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000377270
1a
ENSE00001944433
chr9:
71650175-71650863
689
FRDA_HUMAN
1-55
55
0
-
-
1.3a
ENST00000377270
3a
ENSE00001089855
chr9:
71661301-71661398
98
FRDA_HUMAN
56-88
33
0
-
-
1.4
ENST00000377270
4
ENSE00001089856
chr9:
71668056-71668176
121
FRDA_HUMAN
88-128
41
1
A:90-128
39
1.5a
ENST00000377270
5a
ENSE00001089858
chr9:
71679854-71679951
98
FRDA_HUMAN
129-161
33
1
A:129-161
33
1.6d
ENST00000377270
6d
ENSE00001865767
chr9:
71687528-71689129
1602
FRDA_HUMAN
161-210
50
1
A:161-210
50
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1ly7a_ (A:)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
N domain of copper amine oxidase-like
(44)
Superfamily
:
Frataxin/Nqo15-like
(24)
Family
:
Frataxin-like
(19)
Protein domain
:
C-terminal domain of frataxin
(6)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1ly7a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1ly7A00 (A:90-210)
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Organisms
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)
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Metal Transport, Frataxin; Chain A
(10)
Homologous Superfamily
:
Metal Transport, Frataxin; Chain A
(8)
Human (Homo sapiens)
(2)
1a
1ly7A00
A:90-210
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Frataxin_Cyay_1ly7A01 (A:91-201)
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Clans
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(
)
Clan
:
no clan defined [family: Frataxin_Cyay]
(7)
Family
:
Frataxin_Cyay
(7)
Homo sapiens (Human)
(5)
1a
Frataxin_Cyay-1ly7A01
A:91-201
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Chain A
Asymmetric Unit 1
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