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Getting 'Exon' information from database.
1LY2
Asym. Unit
Info
Asym.Unit (28 KB)
Biol.Unit 1 (25 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF UNLIGANDED HUMAN CD21 SCR1-SCR2 (COMPLEMENT RECEPTOR TYPE 2)
Authors
:
A. E. Prota, D. R. Sage, T. Stehle, J. D. Fingeroth
Date
:
06 Jun 02 (Deposition) - 05 Jul 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Complement Receptor; Epstein Barr Virus; Regulator Of Complement Activation; Short Consensus Repeat; Viral Receptor; Complement Control Protein, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. E. Prota, D. R. Sage, T. Stehle, J. D. Fingeroth
The Crystal Structure Of Human Cd21: Implications For Epstein-Barr Virus And C3D Binding.
Proc. Natl. Acad. Sci. Usa V. 99 10641 2002
[
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:87 , ASN A:101 , ILE A:129
BINDING SITE FOR RESIDUE NAG A 1001
2
AC2
SOFTWARE
TYR A:16 , ASP A:56 , LYS A:57 , PRO A:58 , GLY A:106 , ASN A:107 , HOH A:1023 , HOH A:1040 , HOH A:1049 , HOH A:1133
BINDING SITE FOR RESIDUE NAG A 1002
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: SUSHI (A:2-64|A:69-128|-|-|-|-|-|-|-|-|-|...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SUSHI
PS50923
Sushi/CCP/SCR domain profile.
CR2_HUMAN
21-84
89-148
152-212
213-273
274-344
408-468
349-407
469-524
525-595
600-659
660-716
717-781
786-845
849-909
910-970
2
A:2-64
A:69-128
-
-
-
-
-
-
-
-
-
-
-
-
-
[
close PROSITE info
]
Exons
(3, 3)
Info
All Exons
Exon 1.1a (A:0-0)
Exon 1.3b (A:0-129)
Exon 1.4b (A:129-129)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.3b
3: Boundary 1.3b/1.4b
4: Boundary 1.4b/1.5
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000367058
1a
ENSE00001952555
chr1:
207627575-207627821
247
CR2_HUMAN
1-20
20
1
A:0-0
1
1.3b
ENST00000367058
3b
ENSE00001069650
chr1:
207639871-207640257
387
CR2_HUMAN
20-149
130
1
A:0-129
130
1.4b
ENST00000367058
4b
ENSE00000882434
chr1:
207641872-207642060
189
CR2_HUMAN
149-212
64
1
A:129-129
1
1.5
ENST00000367058
5
ENSE00000882436
chr1:
207642145-207642244
100
CR2_HUMAN
212-245
34
0
-
-
1.6
ENST00000367058
6
ENSE00000791926
chr1:
207642495-207642577
83
CR2_HUMAN
245-273
29
0
-
-
1.7b
ENST00000367058
7b
ENSE00000882439
chr1:
207643040-207643447
408
CR2_HUMAN
273-409
137
0
-
-
1.8
ENST00000367058
8
ENSE00000882440
chr1:
207644085-207644261
177
CR2_HUMAN
409-468
60
0
-
-
1.9a
ENST00000367058
9a
ENSE00000882441
chr1:
207644342-207644432
91
CR2_HUMAN
468-498
31
0
-
-
1.10
ENST00000367058
10
ENSE00001167936
chr1:
207644768-207644844
77
CR2_HUMAN
498-524
27
0
-
-
1.12b
ENST00000367058
12b
ENSE00001381764
chr1:
207646117-207646524
408
CR2_HUMAN
524-660
137
0
-
-
1.14
ENST00000367058
14
ENSE00001167916
chr1:
207647146-207647230
85
CR2_HUMAN
660-688
29
0
-
-
1.15
ENST00000367058
15
ENSE00001167908
chr1:
207647586-207647668
83
CR2_HUMAN
688-716
29
0
-
-
1.16a
ENST00000367058
16a
ENSE00001167899
chr1:
207648169-207648561
393
CR2_HUMAN
716-847
132
0
-
-
1.17
ENST00000367058
17
ENSE00001167890
chr1:
207649579-207649764
186
CR2_HUMAN
847-909
63
0
-
-
1.18
ENST00000367058
18
ENSE00001167878
chr1:
207651230-207651415
186
CR2_HUMAN
909-971
63
0
-
-
1.19
ENST00000367058
19
ENSE00001167866
chr1:
207652602-207652625
24
CR2_HUMAN
971-979
9
0
-
-
1.20
ENST00000367058
20
ENSE00001167855
chr1:
207653323-207653398
76
CR2_HUMAN
979-1004
26
0
-
-
1.21b
ENST00000367058
21b
ENSE00001246608
chr1:
207658809-207658917
109
CR2_HUMAN
1004-1033
30
0
-
-
1.22b
ENST00000367058
22b
ENSE00001841611
chr1:
207662487-207663240
754
CR2_HUMAN
-
0
0
-
-
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1ly2a1 (A:0-66)
1b: SCOP_d1ly2a2 (A:67-129)
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)
(
)
Folds
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)
(
)
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Complement control module/SCR domain
(70)
Superfamily
:
Complement control module/SCR domain
(70)
Family
:
Complement control module/SCR domain
(67)
Protein domain
:
Complement receptor 2, cr2
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d1ly2a1
A:0-66
1b
d1ly2a2
A:67-129
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1ly2A02 (A:70-128)
1b: CATH_1ly2A01 (A:0-64)
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(
)
(
)
Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Complement Module; domain 1
(62)
Homologous Superfamily
:
Complement Module, domain 1
(60)
Human (Homo sapiens)
(46)
1a
1ly2A02
A:70-128
1b
1ly2A01
A:0-64
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Sushi_1ly2A01 (A:71-126)
1b: PFAM_Sushi_1ly2A02 (A:71-126)
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Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Sushi]
(50)
Family
:
Sushi
(50)
Homo sapiens (Human)
(42)
1a
Sushi-1ly2A01
A:71-126
1b
Sushi-1ly2A02
A:71-126
[
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]
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Chain A
Asymmetric Unit 1
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